RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 OOEPA6NGQ2 149 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 A6NIN4 97 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 A8MXK9 166 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 SRRM5B3KS81 715 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 ZNF732B4DXR9 585 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 E9PI62 339 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 C3orf80F5H4A9 247 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 H3BSH0 61 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.82□□□□□ -1.16
LDLR-211ENST00000560173 FOXH1O75593 365 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 NRASP01111 189 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 ISG15P05161 165 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 WNT2P09544 360 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 HSMCR30P0CW71 290 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 RPS2P15880 293 aaKnown RBP7.82□□□□□ -1.16
LDLR-211ENST00000560173 CPT2P23786 658 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 ETV1P50549 477 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 GPM6AP51674 278 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 TAS2R43P59537 309 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 LCN2P80188 198 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 ACSM1Q08AH1 577 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 MRPL28Q13084 256 aaKnown RBP7.82□□□□□ -1.16
LDLR-211ENST00000560173 GPR50Q13585 617 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 ALKBH1Q13686 389 aaKnown RBP7.82□□□□□ -1.16
LDLR-211ENST00000560173 CTF1Q16619 201 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 CHRFAM7AQ494W8 412 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 DMRTC1Q5HYR2 192 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 FAM120AOSQ5T036 256 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 TMEM244Q5VVB8 128 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 TEX36Q5VZQ5 186 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 DCDC5Q6ZRR9 648 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 SLC16A12Q6ZSM3 486 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 SCCPDHQ8NBX0 429 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 OR5A2Q8NGI9 324 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 OR10Z1Q8NGY1 313 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 OR10AC1Q8NH08 325 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 NEIL1Q96FI4 390 aaPredicted RBP7.82□□□□□ -1.16
LDLR-211ENST00000560173 CHST5Q9GZS9 411 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 SHARPINQ9H0F6 387 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 PLEKHA1Q9HB21 404 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 TRIM36Q9NQ86 728 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 LPAR3Q9UBY5 353 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 MIOXQ9UGB7 285 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 LSM2Q9Y333 95 aaKnown RBP7.82□□□□□ -1.16
LDLR-211ENST00000560173 ARHGAP32A7KAX9 2087 aa7.82□□□□□ -1.16
LDLR-211ENST00000560173 TRAV38-1A0A0B4J264 116 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 PPIAL4CA0A0B4J2A2 164 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 A0A0G2JMP0 313 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 A0A0X1KG70 313 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 PQLC2LA1A4F0 135 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 TNFRSF13BO14836 293 aaPredicted RBP7.81□□□□□ -1.16
LDLR-211ENST00000560173 GATBO75879 557 aaKnown RBP7.81□□□□□ -1.16
LDLR-211ENST00000560173 CPEP16870 476 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 ZNF12P17014 697 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 HNF1AP20823 631 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 GALP22466 123 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 PITPNBP48739 271 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 TGM4P49221 684 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 GBX2P52951 348 aaPredicted RBP7.81□□□□□ -1.16
LDLR-211ENST00000560173 TRAM1Q15629 374 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 KCNJ8Q15842 424 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 ESCO2Q56NI9 601 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 SFRP4Q6FHJ7 346 aaPredicted RBP7.81□□□□□ -1.16
LDLR-211ENST00000560173 LYPD2Q6UXB3 125 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 IL17RELQ6ZVW7 336 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 NLRC3Q7RTR2 1065 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 FAM90A1Q86YD7 464 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 ZNF676Q8N7Q3 588 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 OR4M2Q8NGB6 313 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 OR8B3Q8NGG8 313 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 OR51A4Q8NGJ6 313 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 PP6455Q8WZ26 134 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 AQP3Q92482 292 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 UFD1Q92890 307 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 C10orf35Q96D05 121 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 OR8B2Q96RD0 313 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 BEX2Q9BXY8 128 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 CLEC2DQ9UHP7 191 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 HHLA2Q9UM44 414 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 SSR3Q9UNL2 185 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 GSTK1Q9Y2Q3 226 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 POLR3KQ9Y2Y1 108 aaPredicted RBP7.81□□□□□ -1.16
LDLR-211ENST00000560173 A3GALT2U3KPV4 340 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 CUBNO60494 3623 aa7.81□□□□□ -1.16
LDLR-211ENST00000560173 IGHV3OR15-7A0A075B7D8 119 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 TMEM212A6NML5 194 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 J3QT63 122 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 PHF1O43189 567 aaPredicted RBP7.8□□□□□ -1.16
LDLR-211ENST00000560173 ADAM20O43506 726 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 NDUFA2O43678 99 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 RHBDL1O75783 438 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 CLPXO76031 633 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 ZFPL1O95159 310 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 GYPAP02724 150 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 MUC1P15941 1255 aaPredicted RBP7.8□□□□□ -1.16
LDLR-211ENST00000560173 GATA3P23771 443 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 SOX6P35712 828 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 TGFBR2P37173 567 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 TPBGQ13641 420 aa7.8□□□□□ -1.16
LDLR-211ENST00000560173 CDK5R1Q15078 307 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms