RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 MEGF11A6BM72 1044 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 NKX6-3A6NJ46 265 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 TRAPPC2LH3BP13 241 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 H7C1Q1 480 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 GABRPO00591 440 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 NDUFA2O43678 99 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 SC5DO75845 299 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 INMTO95050 263 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 NXPH2O95156 264 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 UCHL1P09936 223 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 PGA5P0DJD9 388 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 IGFBP3P17936 291 aaPredicted RBP8.47□□□□□ -1.05
USP3-216ENST00000559873 MYL9P24844 172 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 CD80P33681 288 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 ZNF93P35789 620 aaPredicted RBP8.47□□□□□ -1.05
USP3-216ENST00000559873 PMELP40967 661 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 ZMYND11Q15326 602 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 KISS1Q15726 138 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 SSX1Q16384 188 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 DMRTC1Q5HYR2 192 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 TEX36Q5VZQ5 186 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 DCDC5Q6ZRR9 648 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 SLC25A26Q70HW3 274 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 FAM90A1Q86YD7 464 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 CDH26Q8IXH8 852 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 SAXO1Q8IYX7 474 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 ZSCAN4Q8NAM6 433 aaPredicted RBP8.47□□□□□ -1.05
USP3-216ENST00000559873 POC1AQ8NBT0 407 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 TMIGD2Q96BF3 282 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 COX4I2Q96KJ9 171 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 FAM192AQ9GZU8 254 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 RHOFQ9HBH0 211 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 EXOSC4Q9NPD3 245 aaKnown RBP8.47□□□□□ -1.05
USP3-216ENST00000559873 DCAF16Q9NXF7 216 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 STUB1Q9UNE7 303 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 GSTK1Q9Y2Q3 226 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 CHD3Q12873 2000 aaKnown RBP8.47□□□□□ -1.05
USP3-216ENST00000559873 DYSFO75923 2080 aa8.47□□□□□ -1.05
USP3-216ENST00000559873 IGHV4-61A0A0C4DH41 118 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 TRDV1A0A1B0GX56 115 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 A0A1W2PPK0 400 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 TRIM64CA6NLI5 447 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 C3orf80F5H4A9 247 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 AKR7A2O43488 359 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 NOS1APO75052 506 aaPredicted RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 PLATP00750 562 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 LHBP01229 141 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 MAS1P04201 325 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 ACAA1P09110 424 aaPredicted RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 FOSL1P15407 271 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 RPS2P15880 293 aaKnown RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 CALRP27797 417 aaKnown RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 GZMKP49863 264 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 PSMD7P51665 324 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 BMXP51813 675 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 ZNF404Q494X3 552 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 GLT8D1Q68CQ7 371 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 UNQ9370/PRO34162Q6UXP9 181 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 SATL1Q86VE3 508 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 LRRC28Q86X40 367 aaPredicted RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 CALHM1Q8IU99 346 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 C11orf53Q8IXP5 236 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 JAGN1Q8N5M9 183 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 OR51A2Q8NGJ7 313 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 OR51F2Q8NH61 342 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 CLDND2Q8NHS1 167 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 TNFAIP8L1Q8WVP5 186 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 FOXRED1Q96CU9 486 aaPredicted RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 C18orf12Q96KH6 178 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 CEP19Q96LK0 163 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 NRIP2Q9BQI9 281 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 DNTTIP1Q9H147 329 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 NARFLQ9H6Q4 476 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 METTL17Q9H7H0 456 aaPredicted RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 SMURF1Q9HCE7 757 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 PCDHB16Q9NRJ7 776 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 SNTG1Q9NSN8 517 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 NLKQ9UBE8 527 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 MIOXQ9UGB7 285 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 SSR3Q9UNL2 185 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 SF3B6Q9Y3B4 125 aaKnown RBP8.46□□□□□ -1.06
USP3-216ENST00000559873 F8P00451 2351 aa8.46□□□□□ -1.06
USP3-216ENST00000559873 IGKV1-27A0A075B6S5 117 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 TRAV8-7A0A075B6U6 113 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 CEACAM18A8MTB9 384 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 PDCD5O14737 125 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 SMAD7O15105 426 aaKnown RBP8.45□□□□□ -1.06
USP3-216ENST00000559873 ZNF780AO75290 641 aaPredicted RBP8.45□□□□□ -1.06
USP3-216ENST00000559873 RHBDL1O75783 438 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 SMIM18P0DKX4 95 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 TMEM225BP0DP42 221 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 CD99P14209 185 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 CD36P16671 472 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 JUNBP17275 347 aaPredicted RBP8.45□□□□□ -1.06
USP3-216ENST00000559873 EGR1P18146 543 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 SRMP19623 302 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 GP2P55259 537 aaKnown RBP8.45□□□□□ -1.06
USP3-216ENST00000559873 GMFBP60983 142 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 FABP5Q01469 135 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 PDZK1IP1Q13113 114 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms