RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TMEM217Q8N7C4 229 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 LINC00469Q8N7U9 141 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 OR10G3Q8NGC4 313 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 OR1N1Q8NGS0 311 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 STT3BQ8TCJ2 826 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 ASB13Q8WXK3 278 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 MARS2Q96GW9 593 aaKnown RBP10.82□□□□□ -0.68
LDLR-205ENST00000557933 PGAM5Q96HS1 289 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 AKIRIN1Q9H9L7 192 aaPredicted RBP10.82□□□□□ -0.68
LDLR-205ENST00000557933 C14orf166Q9Y224 244 aaKnown RBP10.82□□□□□ -0.68
LDLR-205ENST00000557933 PQLC2LA1A4F0 135 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 FAM157AC9JC47 383 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 HSPB6O14558 160 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 IFNA2P01563 188 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 CD5P06127 495 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 FPR2P25090 351 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 CSNK1EP49674 416 aaKnown RBP10.81□□□□□ -0.68
LDLR-205ENST00000557933 TOMM20Q15388 145 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 HAGHQ16775 308 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 ZNF565Q8N9K5 539 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 DTWD2Q8NBA8 298 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 OR56B1Q8NGI3 324 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 S100A13Q99584 98 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 PRRX2Q99811 253 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 CNTNAP3Q9BZ76 1288 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 TWSG1Q9GZX9 223 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 IGKV3D-11A0A0A0MRZ8 115 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 MBPP02686 304 aaPredicted RBP10.81□□□□□ -0.68
LDLR-205ENST00000557933 SULT1A1P50225 295 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 DAP3P51398 398 aaKnown RBP10.81□□□□□ -0.68
LDLR-205ENST00000557933 C4orf17Q53FE4 359 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 ZFP62Q8NB50 900 aaPredicted RBP10.81□□□□□ -0.68
LDLR-205ENST00000557933 LYZL4Q96KX0 146 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 OSGIN2Q9Y236 505 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 CACNA1DQ01668 2161 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 VSTM2BA6NLU5 285 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 H7C1Q1 480 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 DVL1P1P54792 670 aaPredicted RBP10.81□□□□□ -0.68
LDLR-205ENST00000557933 NAAAQ02083 359 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 GFI1BQ5VTD9 330 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 OR6S1Q8NH40 331 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 PECRQ9BY49 303 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 PIGLQ9Y2B2 252 aa10.81□□□□□ -0.68
LDLR-205ENST00000557933 MRPS17Q9Y2R5 130 aaKnown RBP10.81□□□□□ -0.68
LDLR-205ENST00000557933 LAMA5O15230 3695 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 HSPB2A8KAH6 182 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 TIAF1O95411 115 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 GUSBP08236 651 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 RAB5AP20339 215 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 SULT1A2P50226 295 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 CLDN17P56750 224 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 HSPB2Q16082 182 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 TMEM268Q5VZI3 342 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 FAHD2BQ6P2I3 314 aaPredicted RBP10.8□□□□□ -0.68
LDLR-205ENST00000557933 Q7L0L9 218 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 UEVLDQ8IX04 471 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 UBALD2Q8IYN6 164 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 ARRDC1Q8N5I2 433 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 FAHD2AQ96GK7 314 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 SHDQ96IW2 340 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 SRPK3Q9UPE1 567 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 TRBV11-1A0A0K0K1C0 115 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 TLCD2A6NGC4 264 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 LIPT2A6NK58 231 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 CELA2AP08217 269 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 NDUFA6P56556 154 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 RUNX1Q01196 453 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 PIGYQ3MUY2 71 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 ACTBL2Q562R1 376 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 KIAA0895LQ68EN5 471 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 SYT13Q7L8C5 426 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 MFSD8Q8NHS3 518 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 URM1Q9BTM9 101 aaKnown RBP10.8□□□□□ -0.68
LDLR-205ENST00000557933 RBM24Q9BX46 236 aaKnown RBP10.8□□□□□ -0.68
LDLR-205ENST00000557933 ZNF700Q9H0M5 742 aa10.8□□□□□ -0.68
LDLR-205ENST00000557933 H0YL77 283 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 EIF1BO60739 113 aaKnown RBP10.79□□□□□ -0.68
LDLR-205ENST00000557933 OR2J2O76002 312 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 CST4P01036 141 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 OR5H8P0DN80 308 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 EIF1P41567 113 aaKnown RBP10.79□□□□□ -0.68
LDLR-205ENST00000557933 PHYHD1Q5SRE7 291 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 DMBX1Q8NFW5 382 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 CCNL2Q96S94 520 aaPredicted RBP10.79□□□□□ -0.68
LDLR-205ENST00000557933 METTL7AQ9H8H3 244 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 ZNF160Q9HCG1 818 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 PPP4R1LQ9P1A2 415 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 CPAMD8Q8IZJ3 1885 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 H3BP45 60 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 CST7O76096 145 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 PNLIPRP3Q17RR3 467 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 SNAI3Q3KNW1 292 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 SGPP2Q8IWX5 399 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 PTX4Q96A99 478 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 ZNF285Q96NJ3 590 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 UCN2Q96RP3 112 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 PCED1AQ9H1Q7 454 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 FGF21Q9NSA1 209 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 TINAGQ9UJW2 476 aa10.79□□□□□ -0.68
LDLR-205ENST00000557933 PADI1Q9ULC6 663 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms