RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 OR3A1P47881 315 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 GUCA2AQ02747 115 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 MOB1BQ7L9L4 216 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 VSTM2LQ96N03 204 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 SF3B5Q9BWJ5 86 aaKnown RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ACTR3CQ9C0K3 210 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 COA4Q9NYJ1 87 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 CHEK1O14757 476 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 PTBP1P26599 531 aaKnown RBP eCLIP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 CDKN2AP42771 156 aaKnown RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 GPR6P46095 362 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 RAB7AP51149 207 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 LIMK1P53667 647 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 SLC37A1P57057 533 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 TNXAQ16473 311 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 CLEC2AQ6UVW9 174 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ZNF788Q6ZQV5 615 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ACOT7LQ6ZUV0 252 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OR6X1Q8NH79 312 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ZNF230Q9UIE0 474 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 LIPT2A6NK58 231 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 MPGP29372 298 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 S100A11P31949 105 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 TGFBR1P36897 503 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 NHLRC1Q6VVB1 395 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OR5B3Q8NH48 314 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 PTP4A1Q93096 173 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ZNF501Q96CX3 271 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 C10orf90Q96M02 699 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 PCGF1Q9BSM1 259 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ADAM19Q9H013 955 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OPN3Q9H1Y3 402 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 FGF20Q9NP95 211 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 TCRBV16S1A1N1A0A5B0 115 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ZNF724A8MTY0 619 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 FUCA1P04066 466 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 WNT1P04628 370 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 GP1BAP07359 652 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 LIFP15018 202 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 FGF7P21781 194 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 NAAAQ02083 359 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ETFDHQ16134 617 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 TMEM41BQ5BJD5 291 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ATP1A1-AS1Q5TC04 95 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 FAHD2BQ6P2I3 314 aaPredicted RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 KCNRGQ8N5I3 272 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ASB10Q8WXI3 467 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 FAHD2AQ96GK7 314 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 GRAMD2BQ96HH9 432 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 GMPPAQ96IJ6 420 aaPredicted RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 FAAP24Q9BTP7 215 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 RSRP1Q9BUV0 290 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 MS4A7Q9GZW8 240 aaPredicted RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 OR2D2Q9H210 308 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 RNF7Q9UBF6 113 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 PCOLCE2Q9UKZ9 415 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 DLEC1Q9Y238 1755 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ONECUT2O95948 504 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 CALCRP30988 508 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 GP2P55259 537 aaKnown RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 RHOBP62745 196 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 KIAA0040Q15053 153 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 PNLIPRP3Q17RR3 467 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 FHL5Q5TD97 284 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 SVBPQ8N300 66 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 SLC25A45Q8N413 288 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 GPR32P1Q8NGA4 272 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 PLSCR3Q9NRY6 295 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 IL20Q9NYY1 176 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ASCC3Q8N3C0 2202 aaKnown RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 C20orf202A1L168 122 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 SMIM17P0DL12 118 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 AKR1C3P42330 323 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 PSG6Q00889 435 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 TRAT1Q6PIZ9 186 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 HIST2H3AQ71DI3 136 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 HSD17B10Q99714 261 aaKnown RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 RASL11BQ9BPW5 248 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 FLVCR2Q9UPI3 526 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 NPTNQ9Y639 398 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 A0A1W2PQD3 144 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 SLC17A2O00624 439 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 CBR1P16152 277 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 TAGLN2P37802 199 aaKnown RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 HAGHQ16775 308 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 TIGITQ495A1 244 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 KRTCAP3Q53RY4 240 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 TOR2AQ5JU69 321 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 MAMSTRQ6ZN01 415 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 SLC51BQ86UW2 128 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 C9orf40Q8IXQ3 194 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 SAP25Q8TEE9 199 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 LHX4Q969G2 390 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ARHGAP5-AS1Q96IT6 56 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 ADGRG7Q96K78 797 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 RHNO1Q9BSD3 238 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 MPC1Q9Y5U8 109 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 RGPD3A6NKT7 1758 aaPredicted RBP7.28□□□□□ -1.24
SYNE2-220ENST00000555612 RGPD4Q7Z3J3 1758 aa7.28□□□□□ -1.24
SYNE2-220ENST00000555612 PRR19A6NJB7 356 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms