RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 POLDIP2Q9Y2S7 368 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 IGKV1-12A0A0C4DH73 117 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 FAM230AA0A1W2PPH8 454 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 CCDC160A6NGH7 325 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 SRRM5B3KS81 715 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 SPRY3O43610 288 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 TPPPO94811 219 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 IGKV1D-12P01611 117 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 PGA5P0DJD9 388 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 RAB6AP20340 208 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 PMELP40967 661 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 MXD1Q05195 221 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 CNPY1Q3B7I2 92 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 C2orf76Q3KRA6 126 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 DMRTA1Q5VZB9 504 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 WDR82Q6UXN9 313 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 C1QL2Q7Z5L3 287 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 FAM90A1Q86YD7 464 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 Q8IYB0 196 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 POC1AQ8NBT0 407 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 ITLN1Q8WWA0 313 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 AP3S1Q92572 193 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 GTF3AQ92664 365 aaKnown RBP8.09□□□□□ -1.11
LIMA1-211ENST00000552338 OR2V2Q96R30 315 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 TM2D1Q9BX74 207 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 EGLN1Q9GZT9 426 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 ABCG5Q9H222 651 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 GCM1Q9NP62 436 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 RASL12Q9NYN1 266 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 PTTG2Q9NZH5 202 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 MTCH1Q9NZJ7 389 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 PLEKHA6Q9Y2H5 1048 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 ETV7Q9Y603 341 aa8.09□□□□□ -1.11
LIMA1-211ENST00000552338 FASNP49327 2511 aaKnown RBP8.09□□□□□ -1.11
LIMA1-211ENST00000552338 FAM90A10PA6NDY2 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A18PA6NE21 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A16PA6NEW6 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A20PA6NIJ5 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A8PA6NJQ4 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A7PA6NKC0 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A22PA8MWA6 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A12PA8MX19 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A5PA8MXJ8 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A23PA8MXZ1 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 TPD52L2O43399 206 aaKnown RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 F12P00748 615 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A15PP0C7V4 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A13PP0C7W8 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A14PP0C7W9 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM90A24PP0C7X0 464 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 OCMP0CE72 109 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 VSIG8P0DPA2 414 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 COL8A1P27658 744 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 OR3A4PP47883 348 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 HNRNPA0Q13151 305 aaKnown RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 ZNF146Q15072 292 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 MPPED2Q15777 294 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM189A2Q15884 450 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 RAB11BQ15907 218 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 ZNF404Q494X3 552 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 SPRNQ5BIV9 151 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM89BQ8N5H3 189 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 JAGN1Q8N5M9 183 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 GCSAMQ8N6F7 178 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 OR10AD1Q8NGE0 317 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 OR51F2Q8NH61 342 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 KCNG3Q8TAE7 436 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 TRMT10AQ8TBZ6 339 aaKnown RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 DVL3Q92997 716 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FAM3DQ96BQ1 224 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 WDFY2Q96P53 400 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 SPACA5Q96QH8 159 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 NRIP2Q9BQI9 281 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 NUDT16L1Q9BRJ7 211 aaKnown RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 CACNG6Q9BXT2 260 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 METTL9Q9H1A3 318 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 IFT22Q9H7X7 185 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 FN3KRPQ9HA64 309 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 SAP30LQ9HAJ7 183 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 LIN7BQ9HAP6 207 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 DYNLRB1Q9NP97 96 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 MYOZ1Q9NP98 299 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 DLL4Q9NR61 685 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 OR5V1Q9UGF6 321 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 DAPK2Q9UIK4 370 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 LAMP3Q9UQV4 416 aa8.08□□□□□ -1.12
LIMA1-211ENST00000552338 MRPS28Q9Y2Q9 187 aaKnown RBP8.08□□□□□ -1.12
LIMA1-211ENST00000552338 DOCK11Q5JSL3 2073 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 A0A0A6YYH2 397 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 A6NJ64 397 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 CDIPTO14735 213 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 TNFRSF13BO14836 293 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-211ENST00000552338 RP2O75695 350 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 NCR1O76036 304 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 CYB5AP00167 134 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 SLC2A2P11168 524 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-211ENST00000552338 ARSBP15848 533 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 LMO1P25800 156 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 POU3F4P49335 361 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 EFNA4P52798 201 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms