RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SLC2A1P11166 492 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 FOXB2Q5VYV0 432 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 XAF1Q6GPH4 301 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 SFT2D1Q8WV19 159 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 LRRC61Q9BV99 259 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 SLIRPQ9GZT3 109 aaKnown RBP6.98□□□□□ -1.29
VPS13D-211ENST00000543710 TOLLIPQ9H0E2 274 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 UBR3Q6ZT12 1888 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 DSPPQ9NZW4 1301 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 TRGV10A0A0A0MS01 117 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 LRRC3CA6NJW4 275 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 MEIS3P2A8K0S8 358 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 SEC14L6B5MCN3 397 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 E9PQ18 207 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 M0R143 59 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 AGPAT2O15120 278 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 MGST1P10620 155 aaKnown RBP6.98□□□□□ -1.29
VPS13D-211ENST00000543710 PVRP15151 417 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 NAAAQ02083 359 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 RGS7BPQ6MZT1 257 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-211ENST00000543710 GRAMD2BQ96HH9 432 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 ADGRL4Q9HBW9 690 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 SIRT3Q9NTG7 399 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-211ENST00000543710 PDE4DIPQ5VU43 2346 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 C9orf170A2RU37 121 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 ZNF727A8MUV8 499 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 SSSCA1O60232 199 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 GABRA6Q16445 453 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 KHDC3LQ587J8 217 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 ACSM5Q6NUN0 579 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 ZNF429Q86V71 674 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 MTURNQ8N3F0 131 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 PLPP7Q8NBV4 271 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 TMEM104Q8NE00 496 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 NUBPLQ8TB37 319 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 PRR14Q9BWN1 585 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 SLC35B3Q9H1N7 401 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 TMEFF2Q9UIK5 374 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-211ENST00000543710 TUBD1Q9UJT1 453 aa6.98□□□□□ -1.29
VPS13D-211ENST00000543710 LNP1A1A4G5 178 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 CDC14BO60729 498 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 PITX3O75364 302 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 DEFA4P12838 97 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 FSTP19883 344 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 SOX8P57073 446 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 RNF4P78317 190 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 MAT1AQ00266 395 aaKnown RBP6.97□□□□□ -1.29
VPS13D-211ENST00000543710 TMEM268Q5VZI3 342 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 LCN10Q6JVE6 187 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 RELTQ969Z4 430 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 TEX37Q96LM6 180 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 ANKRD10Q9NXR5 420 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 A0A0U1RQK1 487 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 ALOX5APP20292 161 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 GLRA1P23415 457 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 ZBTB25P24278 435 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 HRH1P35367 487 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 AGFG1P52594 562 aaKnown RBP6.97□□□□□ -1.29
VPS13D-211ENST00000543710 PCBP3P57721 371 aaKnown RBP6.97□□□□□ -1.29
VPS13D-211ENST00000543710 YBX1P67809 324 aaKnown RBP6.97□□□□□ -1.29
VPS13D-211ENST00000543710 ZNF117Q03924 483 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 TLE1Q04724 770 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 LILRA6Q6PI73 481 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 C20orf196Q8IYI0 205 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 OR5B3Q8NH48 314 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 COPS9Q8WXC6 57 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 RAB24Q969Q5 203 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 ATG101Q9BSB4 218 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 RBM38Q9H0Z9 239 aaKnown RBP6.97□□□□□ -1.29
VPS13D-211ENST00000543710 TMEM231Q9H6L2 316 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 DCTN6O00399 190 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 PNPP00491 289 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 SLC25A6P12236 298 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 PIGPP57054 158 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 RHOBP62745 196 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 RNF151Q2KHN1 245 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 LRRC10Q5BKY1 277 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 OR52W1Q6IF63 320 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 ZNF793Q6ZN11 406 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 DOLPP1Q86YN1 238 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 OR10X1Q8NGY0 326 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 OR6X1Q8NH79 312 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 GMPPAQ96IJ6 420 aaPredicted RBP6.97□□□□□ -1.29
VPS13D-211ENST00000543710 ADGRG7Q96K78 797 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 Q96M85 177 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 GPR137Q96N19 417 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 LRRC3BQ96PB8 259 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 NUDT22Q9BRQ3 303 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 SBF2Q86WG5 1849 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 DHHO43323 396 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 HOXC5Q00444 222 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 BATFQ16520 125 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 PRICKLE4Q2TBC4 344 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 C1QTNF12Q5T7M4 302 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 SEZ6L2Q6UXD5 910 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 VSTM2AQ8TAG5 236 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 PERPQ96FX8 193 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 GPR84Q9NQS5 396 aa6.97□□□□□ -1.29
VPS13D-211ENST00000543710 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms