RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 PLEK2Q9NYT0 353 aa4.37□□□□□ -1.71
CLIP1-217ENST00000543205 EIF3KQ9UBQ5 218 aaKnown RBP4.37□□□□□ -1.71
CLIP1-217ENST00000543205 NF1P21359 2839 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 IGHV2OR16-5A0A0B4J2B6 119 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 A0A1W2PPQ1 181 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 A0A1W2PPW3 197 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 C5orf49A4QMS7 147 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SNTNA6NMZ2 147 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SHISA9B4DS77 424 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ATP6V1G2-DDX39BF2Z307 99 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 RER1O15258 196 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 COX5BP10606 129 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CCL2P13500 99 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ZNF35P13682 527 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SLC2A5P22732 501 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 GCSHP23434 173 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CALCRP30988 508 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 HTR5AP47898 357 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SNRPGP62308 76 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 MRPS15P82914 257 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 HGFACQ04756 655 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SLAQ13239 276 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 KEAP1Q14145 624 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 EIF2B1Q14232 305 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 RAB35Q15286 201 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 TAF13Q15543 124 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CARTPTQ16568 116 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ZNF672Q499Z4 452 aaPredicted RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ELFN2Q5R3F8 820 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 LINC01590Q5TEZ4 76 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 PRAMEF5Q5TYX0 476 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 PRAMEF6Q5VXH4 476 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 MEDAGQ5VYS4 303 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SLC18B1Q6NT16 456 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ARL9Q6T311 187 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SHFQ7M4L6 423 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 DCXRQ7Z4W1 244 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 BCDIN3DQ7Z5W3 292 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 MYPOPQ86VE0 399 aaPredicted RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ZNF584Q8IVC4 421 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 TMEM217Q8N7C4 229 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CPEB3Q8NE35 698 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 OR6N2Q8NGY6 317 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 OR1F12Q8NHA8 337 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 TSEN15Q8WW01 171 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 NEUROG1Q92886 237 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 RFKQ969G6 155 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 R3HDM4Q96D70 268 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 Q96MT0 163 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ZNF582Q96NG8 517 aaPredicted RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 PRR25Q96S07 402 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 PITX2Q99697 317 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 TMEM204Q9BSN7 226 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 NEK6Q9HC98 313 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 RAB18Q9NP72 206 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CLN6Q9NWW5 311 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CISD1Q9NZ45 108 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 DNAJC27Q9NZQ0 273 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 WARS2Q9UGM6 360 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CYB5R1Q9UHQ9 305 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 LHFPL6Q9Y693 200 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CCDC168Q8NDH2 2452 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 FBN3Q75N90 2809 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 OTOGQ6ZRI0 2925 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CELSR2Q9HCU4 2923 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 A0A087X0K7 114 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 CCDC182A6NF36 153 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 OR6C6A6NF89 314 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 E9PQ18 207 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 TEX46H3BTG2 121 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 DLGAP1O14490 977 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 VCYO14598 125 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 PRYO14603 147 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SYNGR3O43761 229 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 MRPL3P09001 348 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SRMP19623 302 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 NR4A1P22736 598 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 HTR1FP30939 366 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 NAA10P41227 235 aaPredicted RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 RPS27P42677 84 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 FABP6P51161 128 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 RPS23P62266 143 aaKnown RBP4.36□□□□□ -1.71
CLIP1-217ENST00000543205 HIST1H3AP68431 136 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 IL5RAQ01344 420 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ECH1Q13011 328 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 MAB21L1Q13394 359 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 IL18R1Q13478 541 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 PNLIPRP3Q17RR3 467 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 KRTAP21-3Q3LHN1 58 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 GAGE13Q4V321 117 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 TEX30Q5JUR7 227 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SLC25A30Q5SVS4 291 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 HIST2H3PS2Q5TEC6 136 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ASPHD2Q6ICH7 369 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 UNQ6126/PRO20091Q6UXV3 157 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 HIST2H3AQ71DI3 136 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 SLC16A9Q7RTY1 509 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 DPY19L4Q7Z388 723 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 ENTHD1Q8IYW4 607 aa4.36□□□□□ -1.71
CLIP1-217ENST00000543205 COMMD1Q8N668 190 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms