RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SULT4A1Q9BR01 284 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 FANCFQ9NPI8 374 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 CEP295Q9C0D2 2601 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 F8VVB4 439 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 F8VWA3 439 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 EIF1BO60739 113 aaKnown RBP14.71□□□□□ -0.05
USP28-208ENST00000540438 WISP2O76076 250 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 MELTFP08582 738 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 CD79AP11912 226 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 RCC1P18754 421 aaPredicted RBP14.71□□□□□ -0.05
USP28-208ENST00000540438 AKIRIN2Q53H80 203 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 OR11L1Q8NGX0 322 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 M1APQ8TC57 530 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 PSMF1Q92530 271 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 ALX4Q9H161 411 aaPredicted RBP14.71□□□□□ -0.05
USP28-208ENST00000540438 TEX13DA0A0J9YY54 714 aaPredicted RBP14.71□□□□□ -0.06
USP28-208ENST00000540438 TMEM127O75204 238 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 FBXO24O75426 580 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 CD37P11049 281 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 C4BPBP20851 252 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 SRSF6Q13247 344 aaKnown RBP14.71□□□□□ -0.06
USP28-208ENST00000540438 PABPC1L2AQ5JQF8 200 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 SLC51BQ86UW2 128 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 SPERTQ8NA61 448 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 OR1S2Q8NGQ3 325 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 OR1F12Q8NHA8 337 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 ZNF488Q96MN9 340 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 CDC6Q99741 560 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 SLC7A10Q9NS82 523 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 AK3Q9UIJ7 227 aa14.71□□□□□ -0.06
USP28-208ENST00000540438 CHRM2P08172 466 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 M6PRP20645 277 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 RAC3P60763 192 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 PLCXD3Q63HM9 321 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 ALKBH2Q6NS38 261 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 BORCS8Q96FH0 119 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 TRAV39A0A0B4J263 110 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 ZNF716A6NP11 495 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 OR7C1O76099 320 aaPredicted RBP14.7□□□□□ -0.06
USP28-208ENST00000540438 NGFP01138 241 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 RPA2P15927 270 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 PSMB6P28072 239 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 DUSP3P51452 185 aaPredicted RBP14.7□□□□□ -0.06
USP28-208ENST00000540438 LSM6P62312 80 aaKnown RBP14.7□□□□□ -0.06
USP28-208ENST00000540438 RNF126Q9BV68 326 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 PRRG4Q9BZD6 226 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 CHST5Q9GZS9 411 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 DEFB127Q9H1M4 99 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 TMEM38BQ9NVV0 291 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 GPR132Q9UNW8 380 aa14.7□□□□□ -0.06
USP28-208ENST00000540438 LSM5Q9Y4Y9 91 aaKnown RBP14.7□□□□□ -0.06
USP28-208ENST00000540438 OTOGLQ3ZCN5 2332 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 DIRAS3O95661 229 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 CLPPQ16740 277 aaPredicted RBP14.69□□□□□ -0.06
USP28-208ENST00000540438 OR2A2Q6IF42 318 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 PXT1Q8NFP0 134 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 OR5T2Q8NGG2 359 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 PTX4Q96A99 478 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 MOB1AQ9H8S9 216 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 KALRNO60229 2985 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 EDN3P14138 238 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 PTGER4P35408 488 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 SSBP1Q04837 148 aaKnown RBP14.69□□□□□ -0.06
USP28-208ENST00000540438 SLC25A26Q70HW3 274 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 OR5L1Q8NGL2 311 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 OR6K3Q8NGY3 331 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 HAS2Q92819 552 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 WNT5BQ9H1J7 359 aa14.69□□□□□ -0.06
USP28-208ENST00000540438 A0A0A6YYH2 397 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 C5orf49A4QMS7 147 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 A6NJ64 397 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 XRCC2O43543 280 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 SYNGR3O43761 229 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 DUS4LO95620 317 aaKnown RBP14.68□□□□□ -0.06
USP28-208ENST00000540438 NRASP01111 189 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 CRHP06850 196 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 SCRN3Q0VDG4 424 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 TMEM128Q5BJH2 165 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 SH2D2AQ9NP31 389 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 SHOXO15266 292 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 B3GALNT1O75752 331 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 SELEP16581 610 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 ARF1P84077 181 aaKnown RBP14.68□□□□□ -0.06
USP28-208ENST00000540438 FAM27BQ5VT28 67 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 TMEM88Q6PEY1 159 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 HDDC2Q7Z4H3 204 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 ADPRHL1Q8NDY3 354 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 OR2V1Q8NHB1 315 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 DHRS9Q9BPW9 319 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 NOSIPQ9Y314 301 aaKnown RBP14.68□□□□□ -0.06
USP28-208ENST00000540438 AUP1Q9Y679 476 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 C10orf128Q5T292 105 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 DTWD2Q8NBA8 298 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 ST3GAL6Q9Y274 331 aa14.68□□□□□ -0.06
USP28-208ENST00000540438 LILRA1O75019 489 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 MRPL33O75394 65 aaKnown RBP14.67□□□□□ -0.06
USP28-208ENST00000540438 IL32P24001 234 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 PMP22Q01453 160 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 PLGLB1Q02325 96 aa14.67□□□□□ -0.06
USP28-208ENST00000540438 ZNF585AQ6P3V2 769 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms