RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SDSLQ96GA7 329 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 MYCBPQ99417 103 aaPredicted RBP9.53□□□□□ -0.88
RTN3-209ENST00000538995 PKIBQ9C010 78 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 CHST5Q9GZS9 411 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 S100A14Q9HCY8 104 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 GPR173Q9NS66 373 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 ACOXLQ9NUZ1 547 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 ONECUT1Q9UBC0 465 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 POMT1Q9Y6A1 747 aa9.53□□□□□ -0.88
RTN3-209ENST00000538995 LOC107986453A0A1B0GWG9 222 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 J3QRE1 110 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 M0R1W7 72 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 MPZL2O60487 215 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 ENTPD6O75354 484 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 SELLP14151 372 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 ACTA2P62736 377 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 ACTG2P63267 376 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 GUCA2AQ02747 115 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 ZNF85Q03923 595 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 RUSC1-AS1Q66K80 236 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 FDX2Q6P4F2 183 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 C16orf87Q6PH81 154 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 Q6YL49 198 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 ACP7Q6ZNF0 438 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 VMO1Q7Z5L0 202 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 EGFL6Q8IUX8 553 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 PQLC1Q8N2U9 271 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 FGFRL1Q8N441 504 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 NPRL2Q8WTW4 380 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 SSMEM1Q8WWF3 244 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 PP6455Q8WZ26 134 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 H1FXQ92522 213 aaKnown RBP9.52□□□□□ -0.89
RTN3-209ENST00000538995 LHX4Q969G2 390 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 RNFT2Q96EX2 444 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 MRPL48Q96GC5 212 aaKnown RBP9.52□□□□□ -0.89
RTN3-209ENST00000538995 DUX5Q96PT3 197 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 MBOAT4Q96T53 435 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 NRIP2Q9BQI9 281 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 ADI1Q9BV57 179 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 UNKLQ9H9P5 680 aaKnown RBP9.52□□□□□ -0.89
RTN3-209ENST00000538995 HES4Q9HCC6 221 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 GNG8Q9UK08 70 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 SLC7A11Q9UPY5 501 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 GMPPBQ9Y5P6 360 aa9.52□□□□□ -0.89
RTN3-209ENST00000538995 MDFIC2A0A1B0GVS7 189 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 SLC1A7O00341 560 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 SLC16A6O15403 523 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 HOXA3O43365 443 aaPredicted RBP9.51□□□□□ -0.89
RTN3-209ENST00000538995 SYNGR1O43759 233 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 SERPINA3P01011 423 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 NDUFB7P17568 137 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 GABRA2P47869 451 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 RPL15P61313 204 aaKnown RBP9.51□□□□□ -0.89
RTN3-209ENST00000538995 IL24Q13007 206 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 BLMHQ13867 455 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 ZIK1Q3SY52 487 aaPredicted RBP9.51□□□□□ -0.89
RTN3-209ENST00000538995 TP53I3Q53FA7 332 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 DMRTC1Q5HYR2 192 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 TMEM244Q5VVB8 128 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 NCR3LG1Q68D85 454 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 LDLRAD3Q86YD5 345 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 PRSS35Q8N3Z0 413 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 ZNF561Q8N587 486 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 ACBD7Q8N6N7 88 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 TMEM185AQ8NFB2 350 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 OR2G2Q8NGZ5 317 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 UBE2FQ969M7 185 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 Q96MT0 163 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 RDH12Q96NR8 316 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 METTL8Q9H825 291 aaKnown RBP9.51□□□□□ -0.89
RTN3-209ENST00000538995 EXOGQ9Y2C4 368 aaKnown RBP9.51□□□□□ -0.89
RTN3-209ENST00000538995 CAB39Q9Y376 341 aaPredicted RBP9.51□□□□□ -0.89
RTN3-209ENST00000538995 MAB21L2Q9Y586 359 aa9.51□□□□□ -0.89
RTN3-209ENST00000538995 SOX21Q9Y651 276 aaPredicted RBP9.51□□□□□ -0.89
RTN3-209ENST00000538995 A0A1W2PQ09 198 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 DAPL1A0PJW8 107 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 RFPL4AA6NLU0 287 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 RFPL4AL1F8VTS6 287 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 NXPH2O95156 264 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 KNG1P01042 644 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 ISG15P05161 165 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 MELTFP08582 738 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 GABRB1P18505 474 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 KIR3DL2P43630 455 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 CCR9P51686 369 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 FUT6P51993 359 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 ERVK11-1P61568 191 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 ZNF91Q05481 1191 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 CNN3Q15417 329 aaKnown RBP9.5□□□□□ -0.89
RTN3-209ENST00000538995 ODF4Q2M2E3 257 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 ZBTB49Q6ZSB9 765 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 UTS2BQ765I0 119 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 ENTHD1Q8IYW4 607 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 Q8N7P7 452 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 ZNRF1Q8ND25 227 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 DNAAF1Q8NEP3 725 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 RHOXF1Q8NHV9 184 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 TBC1D15Q8TC07 691 aa9.5□□□□□ -0.89
RTN3-209ENST00000538995 RNF166Q96A37 237 aaPredicted RBP9.5□□□□□ -0.89
RTN3-209ENST00000538995 LGALS12Q96DT0 336 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms