RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TMEM239Q8WW34 195 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 BCL2L2Q92843 193 aaPredicted RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 MCUR1Q96AQ8 359 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 TAMM41Q96BW9 452 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CMTM5Q96DZ9 223 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ZNF317Q96PQ6 595 aaPredicted RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 RBP7Q96R05 134 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 OR2M2Q96R28 347 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ARHGDIGQ99819 225 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 KCTD14Q9BQ13 255 aaPredicted RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 TMEM43Q9BTV4 400 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 OR51B6Q9H340 312 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 RERGLQ9H628 205 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 KAT8Q9H7Z6 458 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 SRD5A3Q9H8P0 318 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 EFCAB1Q9HAE3 211 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 IL1RAPQ9NPH3 570 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 SAR1AQ9NR31 198 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 INIPQ9NRY2 104 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CA10Q9NS85 328 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ARMCX1Q9P291 453 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 STX18Q9P2W9 335 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 EIF3KQ9UBQ5 218 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 RIMS3Q9UJD0 308 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NSG2Q9Y328 171 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ZNF407Q9C0G0 2248 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CELSR2Q9HCU4 2923 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 EXPH5Q8NEV8 1989 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 MED13LQ71F56 2210 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ATRQ13535 2644 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ARHGAP21Q5T5U3 1957 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 IGKV1D-42A0A075B6H8 117 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 LOC102725191A0A1B0GVB3 256 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 GMNCA6NCL1 334 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 EFCAB9A8MZ26 197 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 FTCDNL1E5RQL4 147 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 K7EQG2 157 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 M0R233 179 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 PDLIM1O00151 329 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 CXCR6O00574 342 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 FBP2O00757 339 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 XKRYO14609 159 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 CTDSPLO15194 276 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ATP8B1O43520 1251 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 TRAF3IP2O43734 574 aaPredicted RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 MTRF1O75570 445 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 OR5F1O95221 314 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 HPRP00739 348 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 SERPINA1P01009 418 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 CD8AP01732 235 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 MT-ND1P03886 318 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ADRA2AP08913 450 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 OR8G3PP0DMU2 310 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 IFI30P13284 250 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ACADSP16219 412 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 SLC25A16P16260 332 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 TCN1P20061 433 aaPredicted RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 HNF1AP20823 631 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 USF1P22415 310 aaPredicted RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 KDELR2P33947 212 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 AQP2P41181 271 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 RBM34P42696 430 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 GDI2P50395 445 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 SLC7A2P52569 658 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 EFNA4P52798 201 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ERVK-16P61578 105 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 GNGT1P63211 74 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 LIPEQ05469 1076 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 TRAM2Q15035 370 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ZNF146Q15072 292 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 TBC1D28Q2M2D7 210 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 MS4A18Q3C1V0 323 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ALKBH6Q3KRA9 238 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ARMCX4Q5H9R4 360 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 COQ5Q5HYK3 327 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 CYB5R2Q6BCY4 276 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 B3GLCTQ6Y288 498 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 CCDC80Q76M96 950 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 SLC16A14Q7RTX9 510 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 PIWIL3Q7Z3Z3 882 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 DPPA2Q7Z7J5 298 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 OAFQ86UD1 273 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 COMTD1Q86VU5 262 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 NKAIN4Q8IVV8 208 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 TMEM123Q8N131 208 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 SVOPLQ8N434 492 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 LRRC18Q8N456 261 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 LRRC17Q8N6Y2 441 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ZNF525Q8N782 197 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ZNF540Q8NDQ6 660 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 NOXO1Q8NFA2 376 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 GPR32P1Q8NGA4 272 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 OR4K5Q8NGD3 323 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 OR51A7Q8NH64 312 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 OR6X1Q8NH79 312 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 PFN4Q8NHR9 129 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 GEMIN6Q8WXD5 167 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 C11orf40Q8WZ69 217 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 BPIFA2Q96DR5 249 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 SLC25A44Q96H78 314 aaPredicted RBP2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms