RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 GABARAPL1Q9H0R8 117 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 OBP2BQ9NPH6 170 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 GSN-AS1Q9NRJ2 163 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 PRSS50Q9UI38 385 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 KLF13Q9Y2Y9 288 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ZAR1LA6NP61 321 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF732B4DXR9 585 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 AREGP15514 252 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 CAMPP49913 170 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 LGALS4P56470 323 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 FAM71E1Q6IPT2 247 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 MFSD12Q6NUT3 480 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM65Q6PI78 240 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 LYPD8Q6UX82 237 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 TAS1R1Q7RTX1 841 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ERASQ7Z444 233 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 CITED2Q99967 270 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 C1QTNF6Q9BXI9 259 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ALX4Q9H161 411 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 GAL3ST2Q9H3Q3 398 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 FBXO4Q9UKT5 387 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 NTNG1Q9Y2I2 539 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ASB1Q9Y576 335 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 TCRBV5S2A0A599 114 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 IFITM5A6NNB3 132 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 SDCBPO00560 298 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 EFSO43281 561 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 PRAMEF4O60810 478 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 CST7O76096 145 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 NDUFB6O95139 128 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 MELTFP08582 738 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 AVPR2P30518 371 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 CCR5P51681 352 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 IHHQ14623 411 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 FAM27D1Q5T7N8 215 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 MYPOPQ86VE0 399 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 PLPP6Q8IY26 295 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 BATF2Q8N1L9 274 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 C9orf62Q8N4C0 152 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 DEFB124Q8NES8 71 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 ZDHHC16Q969W1 377 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 ORAI1Q96D31 301 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC6A18Q96N87 628 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 MAGT1Q9H0U3 335 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 CXCL16Q9H2A7 254 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 ZFP30Q9Y2G7 519 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 SIPA1L1O43166 1804 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 GALR3O60755 368 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 NPPBP16860 134 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 RPS27P42677 84 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 CLDN17P56750 224 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 RBM11P57052 281 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 GFRALQ6UXV0 394 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 SPNS3Q6ZMD2 512 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 OR2Y1Q8NGV0 311 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 NEIL1Q96FI4 390 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 TRMT61AQ96FX7 289 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 DERL1Q9BUN8 251 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 CLDN16Q9Y5I7 305 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 RECKO95980 971 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 PRF1P14222 555 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 BRS3P32247 399 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 CDX1P47902 265 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 GNG4P50150 75 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 SSR4P51571 173 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 PCBD1P61457 104 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 DCAF7P61962 342 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 TIAL1Q01085 375 aaKnown RBP eCLIP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 TRIP6Q15654 476 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 PLA1AQ53H76 456 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 PRSS36Q5K4E3 855 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 FDX2Q6P4F2 183 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 OR10G8Q8NGN5 311 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 GABARAPL3Q9BY60 117 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 KLK11Q9UBX7 282 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 FCMRO60667 390 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 IAPPP10997 89 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 GLRA1P23415 457 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 FAM3BP58499 235 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 TPBGQ13641 420 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 OR5D13Q8NGL4 314 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 SGK494Q96LW2 274 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 ASB16Q96NS5 453 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 WDFY2Q96P53 400 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 ANAPC13Q9BS18 74 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 CYSLTR2Q9NS75 346 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 LOXL2Q9Y4K0 774 aa7.86□□□□□ -1.15
LIMCH1-218ENST00000513024 LINC00587B1AMM8 73 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 CTNSO60931 367 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF737O75373 536 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 IGHA1P01876 353 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SMIM17P0DL12 118 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC25A34Q6PIV7 304 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 MED25Q71SY5 747 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 RIMKLAQ8IXN7 391 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC38A9Q8NBW4 561 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 OR10J5Q8NHC4 309 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 LOXL4Q96JB6 756 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 SPACA5Q96QH8 159 aa7.85□□□□□ -1.15
LIMCH1-218ENST00000513024 HSPB9Q9BQS6 159 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms