RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 E5RGE8 158 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 TMEM127O75204 238 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 DHRS3O75911 302 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 SEMG1P04279 462 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 CCL2P13500 99 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 ZIC1Q15915 447 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 NSG2Q9Y328 171 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 OR5H1A6NKK0 313 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 H7BYZ3 331 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 SLC17A2O00624 439 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 NME2P1O60361 137 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 GOSR1O95249 250 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 SLC25A6P12236 298 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 MAGEA5P43359 124 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 MMP15P51511 669 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 WNT3P56703 355 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 SP7Q8TDD2 431 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-215ENST00000496447 FBXO34Q9NWN3 711 aa11.71□□□□□ -0.53
PTPRF-215ENST00000496447 RREB1Q92766 1687 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 TRAV1-2A0A0B4J238 106 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 GPANK1O95872 356 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF141Q15928 474 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 ACY3Q96HD9 319 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 RNASEK-C17orf49H0YIS7 233 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 CDK2AP1O14519 115 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 XRCC3O43542 346 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 EPXP11678 715 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF250P15622 560 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 COX7A1P24310 79 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 EPHA2P29317 976 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 UBALD1Q8TB05 177 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 PHYHIPLQ96FC7 376 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 DERL3Q96Q80 235 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF586Q9NXT0 402 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF835Q9Y2P0 537 aa11.71□□□□□ -0.54
PTPRF-215ENST00000496447 BCORQ6W2J9 1755 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 A0A087X0M5 115 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 A0A1B0GX30 115 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SERTM1A2A2V5 107 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 GPR31O00270 319 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 OR4E1P0C645 316 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 RPL12P30050 165 aaKnown RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 PDCD1Q15116 288 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 PLA1AQ53H76 456 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 FAM219BQ5XKK7 198 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 GLDNQ6ZMI3 551 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 MOB1BQ7L9L4 216 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 OR4S1Q8NGB4 309 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 AUNIPQ9H7T9 357 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 FLVCR2Q9UPI3 526 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 AQP7P3A6NL99 342 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 M0R143 59 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 FABP4P15090 132 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 HNF1AP20823 631 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 UBE2MP61081 183 aaKnown RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SUMO1P63165 101 aaKnown RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 C12orf73Q69YU5 71 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 DUSP18Q8NEJ0 188 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 OR4F5Q8NH21 305 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 OR4F4Q96R69 305 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 NPAS1Q99742 590 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 GAL3ST2Q9H3Q3 398 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 UBTD1Q9HAC8 227 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 PLEKHB1Q9UF11 243 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 RP1L1Q8IWN7 2480 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 PLPP3O14495 311 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 COX5AP20674 150 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 RAC3P60763 192 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 C3AR1Q16581 482 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SLC25A35Q3KQZ1 300 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 Q56UQ5 140 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 LYG1Q8N1E2 194 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 OR8U1Q8NH10 309 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 LYRM2Q9NU23 88 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 NUP205Q92621 2012 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 CLEC18AA5D8T8 446 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 DEFB108AA8MXU0 73 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 ACTL6AO96019 429 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 CD37P11049 281 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SFTPCP11686 197 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 UCNP55089 124 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 KIAA0040Q15053 153 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 WDR38Q5JTN6 314 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 C9orf62Q8N4C0 152 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 CLEC18CQ8NCF0 446 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 PLEKHA2Q9HB19 425 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SEC14L6B5MCN3 397 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 M0QZK8 103 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 GGCTO75223 188 aaKnown RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 KISS1Q15726 138 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 TIGITQ495A1 244 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SPICQ8N5J4 248 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 ZFP62Q8NB50 900 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SMIM4Q8WVI0 70 aa11.7□□□□□ -0.54
PTPRF-215ENST00000496447 SHROOM3Q8TF72 1996 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 ELOA3CA0A087WX78 387 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF785A8K8V0 405 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 C3orf80F5H4A9 247 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 CEACAM6P40199 344 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 PHYHD1Q5SRE7 291 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms