RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 LHFPL1Q86WI0 220 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 OR8H3Q8N146 312 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 OR13G1Q8NGZ3 307 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 EMG1Q92979 244 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 GPR132Q9UNW8 380 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 CD8AP01732 235 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 HLA-GP17693 338 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 AGTR1P30556 359 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 OR3A3P47888 321 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 OR3A2P47893 321 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 NPY4RP50391 375 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 PMP22Q01453 160 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 TAF9Q16594 264 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 PXT1Q8NFP0 134 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 PHB2Q99623 299 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 IL36GQ9NZH8 169 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 RFPL4AA6NLU0 287 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 RFPL4AL1F8VTS6 287 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 CCSO14618 274 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 VAMP1P23763 118 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 ARR3P36575 388 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 GMFBP60983 142 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 PDZK1IP1Q13113 114 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 LIN54Q6MZP7 749 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 REPIN1Q9BWE0 567 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 C5orf66Q9H5L9 145 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 C12orf49Q9H741 205 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 ZNF701Q9NV72 531 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 ZNF581Q9P0T4 197 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 UBQLN2Q9UHD9 624 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 HSF4Q9ULV5 492 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 OSGIN2Q9Y236 505 aa18.25■□□□□ 0.51
CCDC88B-208ENST00000492980 SLC22A20A6NK97 555 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 SDCBPO00560 298 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 MSTNO14793 375 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 DUS4LO95620 317 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 WT1P19544 449 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 FPR2P25090 351 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 CCL11P51671 97 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 RAB1AP62820 205 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 RPUSD3Q6P087 351 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 PEG10Q86TG7 708 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 TMEM17Q86X19 198 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 OR5AP2Q8NGF4 316 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 CASTOR1Q8WTX7 329 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 HDHD3Q9BSH5 251 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 EHFQ9NZC4 300 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 GPR160Q9UJ42 338 aa18.24■□□□□ 0.51
CCDC88B-208ENST00000492980 IGKV1D-8A0A087WSZ0 117 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 ZNF850A8MQ14 1090 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 NOS1APO75052 506 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 S100A11P31949 105 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 AADACL3Q5VUY0 350 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 TMUB2Q71RG4 321 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 NAXEQ8NCW5 288 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 FDCSPQ8NFU4 85 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 OR56B2PQ8NGI1 322 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 TMEM230Q96A57 120 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 PPA2Q9H2U2 334 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 SS18L1O75177 396 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 CHATP28329 748 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 CHRFAM7AQ494W8 412 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 OVCH2Q7RTZ1 564 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 TMEM185AQ8NFB2 350 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 APOBEC3DQ96AK3 386 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 POM121L2Q96KW2 1035 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 FAAP24Q9BTP7 215 aa18.23■□□□□ 0.51
CCDC88B-208ENST00000492980 RPS10-NUDT3A0A1W2PQS6 291 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 IL18BPO95998 194 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 SFTPBP07988 381 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 HLXQ14774 488 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 PIGYQ3MUY2 71 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 TMEM128Q5BJH2 165 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 OSR2Q8N2R0 312 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 AK3Q9UIJ7 227 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 MAB21L2Q9Y586 359 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 PTPRBP23467 1997 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 OR5H14A6NHG9 310 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 CALHM1Q8IU99 346 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 FBXL14Q8N1E6 418 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 OR1K1Q8NGR3 316 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 MRPS24Q96EL2 167 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 SCGB3A2Q96PL1 93 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 PDCD10Q9BUL8 212 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 IRF2BPLQ9H1B7 796 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 GP6Q9HCN6 339 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 CRIM1Q9NZV1 1036 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 ZNF175Q9Y473 711 aa18.22■□□□□ 0.51
CCDC88B-208ENST00000492980 LINC00862A6NCI5 91 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 DBX1A6NMT0 343 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 GEMIN2O14893 280 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 RPA2P15927 270 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 MPGP29372 298 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 MALLQ13021 153 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 HIKESHIQ53FT3 197 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 FBXW9Q5XUX1 488 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 MRPL21Q7Z2W9 205 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 ZSCAN4Q8NAM6 433 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 OR51F2Q8NH61 342 aa18.21■□□□□ 0.51
CCDC88B-208ENST00000492980 SULT4A1Q9BR01 284 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms