RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAM27BQ5VT28 67 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 RPL7L1Q6DKI1 246 aaKnown RBP15.65■□□□□ 0.1
VIM-206ENST00000487938 REEP6Q96HR9 211 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 Q96M66 194 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 LIME1Q9H400 295 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 ZNF629Q9UEG4 869 aaPredicted RBP15.65■□□□□ 0.1
VIM-206ENST00000487938 IGKV1-27A0A075B6S5 117 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 RCC1P18754 421 aaPredicted RBP15.65■□□□□ 0.1
VIM-206ENST00000487938 RSU1Q15404 277 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 OR2A2Q6IF42 318 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 LDLRAD3Q86YD5 345 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 SULF2Q8IWU5 870 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 DYRK2Q92630 601 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 TLNRD1Q9H1K6 362 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 CRLF2Q9HC73 371 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 PCDHB16Q9NRJ7 776 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 CCDC187A0A096LP49 1063 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 NSG1A0A0A6YYJ2 146 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 A0A0G2JMM0 328 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 A0A1W2PPB8 328 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 A0A1W2PRS3 328 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 KIR3DP1A8MWS1 328 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 CBR3O75828 277 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 LCATP04180 440 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 CCDC157Q569K6 752 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 PABPC1L2AQ5JQF8 200 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 Q6ZSR3 168 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.64■□□□□ 0.09
VIM-206ENST00000487938 UBALD2Q8IYN6 164 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 AGBL5Q8NDL9 886 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 AKR7LQ8NHP1 331 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 M1APQ8TC57 530 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 CNTNAP3BQ96NU0 1288 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 METTL9Q9H1A3 318 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 SH2D2AQ9NP31 389 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 C1orf123Q9NWV4 160 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 AK3Q9UIJ7 227 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 PATE3B3GLJ2 98 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 C9J4A7 227 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 APOC1P02654 83 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 HKR1P10072 659 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 ZNF708P17019 499 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 SUCLG1P53597 346 aaKnown RBP15.64■□□□□ 0.09
VIM-206ENST00000487938 MRPS34P82930 218 aaKnown RBP15.64■□□□□ 0.09
VIM-206ENST00000487938 SPEM2Q0P670 501 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 SURF2Q15527 256 aaPredicted RBP15.64■□□□□ 0.09
VIM-206ENST00000487938 STK11Q15831 433 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 SVBPQ8N300 66 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 FAM96BQ9Y3D0 163 aa15.64■□□□□ 0.09
VIM-206ENST00000487938 FAM221AA4D161 298 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 SYNGR3O43761 229 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 LRP3O75074 770 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 CYC1P08574 325 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 PET100P0DJ07 73 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 CRYGSP22914 178 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 MLF1P58340 268 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 PMS2CLQ68D20 193 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 SGPP2Q8IWX5 399 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 INTS12Q96CB8 462 aaKnown RBP15.63■□□□□ 0.09
VIM-206ENST00000487938 MMP26Q9NRE1 261 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 LPAR3Q9UBY5 353 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 ANXA10Q9UJ72 324 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 PURGQ9UJV8 347 aaKnown RBP15.63■□□□□ 0.09
VIM-206ENST00000487938 MEMO1Q9Y316 297 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 CCDC163A0A0D9SF12 145 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 ZNF850A8MQ14 1090 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 OR5H8P0DN80 308 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 B4GALT1P15291 398 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 SCRN3Q0VDG4 424 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 ARL6IP1Q15041 203 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 PDCD1Q15116 288 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 SP6Q3SY56 376 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 MAFAQ8NHW3 353 aaPredicted RBP15.63■□□□□ 0.09
VIM-206ENST00000487938 TOMM40LQ969M1 308 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 MRPL24Q96A35 216 aaKnown RBP15.63■□□□□ 0.09
VIM-206ENST00000487938 C10orf35Q96D05 121 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 CPNE2Q96FN4 548 aaPredicted RBP15.63■□□□□ 0.09
VIM-206ENST00000487938 ALKBH3Q96Q83 286 aaPredicted RBP15.63■□□□□ 0.09
VIM-206ENST00000487938 CNTNAP3Q9BZ76 1288 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 TAF9BQ9HBM6 251 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 DNAJB11Q9UBS4 358 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 PADI1Q9ULC6 663 aa15.63■□□□□ 0.09
VIM-206ENST00000487938 ZNF32P17041 273 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 NME2P22392 152 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 CARD18P57730 90 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 PPA1Q15181 289 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 NSUN5P2Q63ZY6 315 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 PLXDC2Q6UX71 529 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 CLEC9AQ6UXN8 241 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 CBLN2Q8IUK8 224 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 OR1F12Q8NHA8 337 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 OR14L1PQ8NHC6 308 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 ADAMTS17Q8TE56 1095 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 IER2Q9BTL4 223 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 LHX6Q9UPM6 363 aa15.62■□□□□ 0.09
VIM-206ENST00000487938 LSM5Q9Y4Y9 91 aaKnown RBP15.62■□□□□ 0.09
VIM-206ENST00000487938 FBXO24O75426 580 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 CA11O75493 328 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 SCGB1D2O95969 90 aa15.61■□□□□ 0.09
VIM-206ENST00000487938 CTSDP07339 412 aaPredicted RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms