RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TMEM11P17152 192 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 BIDP55957 195 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 ZNF121P58317 390 aaPredicted RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 EIF3IQ13347 325 aaKnown RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 ZNF542PQ5EBM4 170 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 CLEC9AQ6UXN8 241 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 SLC22A18ASQ8N1D0 253 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 MR1Q95460 341 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 CYYR1Q96J86 154 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 WWTR1Q9GZV5 400 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 WFDC1Q9HC57 220 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 SOHLH2Q9NX45 425 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 COPS7AQ9UBW8 275 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 C1QL1O75973 258 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 AFF3P51826 1226 aaKnown RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 ZXDAP98168 799 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 RELQ04864 619 aaPredicted RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 DBX2Q6ZNG2 339 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 ZNF610Q8N9Z0 462 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 FAM213BQ8TBF2 198 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 BSCL2Q96G97 398 aaPredicted RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 SH3BGRL3Q9H299 93 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 DOK5Q9P104 306 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 ATXN7L1Q9ULK2 861 aaPredicted RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 MRPS17Q9Y2R5 130 aaKnown RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 HS3ST3A1Q9Y663 406 aa11.67□□□□□ -0.54
USP40-214ENST00000483519 IGKV3D-11A0A0A0MRZ8 115 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 IFITM10A6NMD0 228 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 B4DGG1 531 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 SEC14L6B5MCN3 397 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 SLC2A1P11166 492 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 SERPINA2P20848 420 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 CCL1P22362 96 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 NUBP1P53384 320 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 MRPS21P82921 87 aaKnown RBP11.66□□□□□ -0.54
USP40-214ENST00000483519 IL13RA2Q14627 380 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 THEM4Q5T1C6 240 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 ZNF574Q6ZN55 896 aaPredicted RBP11.66□□□□□ -0.54
USP40-214ENST00000483519 TTLL10Q6ZVT0 673 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 HSD17B11Q8NBQ5 300 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 STT3BQ8TCJ2 826 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 SSC4DQ8WTU2 575 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 GALNT14Q96FL9 552 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 ZDHHC12Q96GR4 267 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 LHFPL6Q9Y693 200 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 A0A087WWC5 75 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 PPP1CCP36873 323 aaKnown RBP11.66□□□□□ -0.54
USP40-214ENST00000483519 ALDH3B1P43353 468 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 ZNF674Q2M3X9 581 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 HIKESHIQ53FT3 197 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 ST8SIA1Q92185 356 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 MRGPRX1Q96LB2 322 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 SOX7Q9BT81 388 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 EMC6Q9BV81 110 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 DECR2Q9NUI1 292 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 KLHL13Q9P2N7 655 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 MMP24Q9Y5R2 645 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 PIAS3Q9Y6X2 628 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 PHF3Q92576 2039 aaKnown RBP11.66□□□□□ -0.54
USP40-214ENST00000483519 NSG1A0A0A6YYJ2 146 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 K7N7A8 449 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 F10P00742 488 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 ZNF17P17021 662 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 CAPZBP47756 277 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 GABRA4P48169 554 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 KISS1Q15726 138 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 DNLZQ5SXM8 178 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 IGF2-ASQ6U949 168 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 PLXDC2Q6UX71 529 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 TMEM182Q6ZP80 229 aaPredicted RBP11.66□□□□□ -0.54
USP40-214ENST00000483519 HPSE2Q8WWQ2 592 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 DDIT4LQ96D03 193 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 TM2D1Q9BX74 207 aa11.66□□□□□ -0.54
USP40-214ENST00000483519 COL5A1P20908 1838 aaPredicted RBP11.65□□□□□ -0.54
USP40-214ENST00000483519 C5orf42Q9H799 3197 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 PCNX3Q9H6A9 2034 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 HIST1H1BP16401 226 aaKnown RBP11.65□□□□□ -0.54
USP40-214ENST00000483519 APOBEC1P41238 236 aaKnown RBP11.65□□□□□ -0.54
USP40-214ENST00000483519 PIGPP57054 158 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 CLRN1P58418 232 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 CD81P60033 236 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 C1orf61Q13536 156 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 OR8G5Q8NG78 346 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 OR5D18Q8NGL1 313 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 SGK3Q96BR1 496 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 NELFAQ9H3P2 528 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 NCOR1O75376 2440 aa11.65□□□□□ -0.54
USP40-214ENST00000483519 IGKV1-9A0A0C4DH69 117 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 A0A1B0GV50 99 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 RBFOX3A6NFN3 312 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 TLCD2A6NGC4 264 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 ZNF587BE7ETH6 402 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 XRCC2O43543 280 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 DIRAS3O95661 229 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 TAGLN2P37802 199 aaKnown RBP11.65□□□□□ -0.55
USP40-214ENST00000483519 OR1D4P47884 311 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 RBP2P50120 134 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 Q3ZCU0 254 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 ABCA11PQ4W5N1 156 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 TMEM31Q5JXX7 168 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms