RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 DAP3P51398 398 aaKnown RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 ARF1P84077 181 aaKnown RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 SKP2Q13309 424 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 MLC1Q15049 377 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 TPRX1Q8N7U7 411 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 BVESQ8NE79 360 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 PRSS33Q8NF86 280 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OR8B12Q8NGG6 310 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 HAS2Q92819 552 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 NAT6Q93015 286 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 MRPL24Q96A35 216 aaKnown RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 GPR137Q96N19 417 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 TXNIPQ9H3M7 391 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 MSL2Q9HCI7 577 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 PIPOXQ9P0Z9 390 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 GNG13Q9P2W3 67 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 HELZ2Q9BYK8 2649 aaKnown RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 A0A1B0GX78 115 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 TRIM77I1YAP6 450 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 M0R135 149 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OGG1O15527 345 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 TFF1P04155 84 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 CRYBA1P05813 215 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OR5AC1P0C628 307 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 TCN2P20062 427 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 RPL12P30050 165 aaKnown RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 ALDH3B1P43353 468 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 POLR2GP62487 172 aaKnown RBP eCLIP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 NHLH2Q02577 135 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 TMEM267Q0VDI3 215 aaPredicted RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 HIST2H3PS2Q5TEC6 136 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 CLEC18BQ6UXF7 455 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 RNF165Q6ZSG1 346 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 ACOT7LQ6ZUV0 252 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 LYZL2Q7Z4W2 148 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 LYG2Q86SG7 212 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 LILRB2Q8N423 598 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 ZNF799Q96GE5 643 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OR10C1Q96KK4 312 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 CLCC1Q96S66 551 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 PIGQQ9BRB3 760 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 PITHD1Q9GZP4 211 aaPredicted RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 ISYNA1Q9NPH2 558 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 FLVCR1Q9Y5Y0 555 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 OBSL1O75147 1896 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 NCOA6Q14686 2063 aaPredicted RBP4.4□□□□□ -1.7
CCDC39-204ENST00000476379 LRBAP50851 2863 aa4.4□□□□□ -1.7
CCDC39-204ENST00000476379 ZGRF1Q86YA3 2104 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 SERTM1A2A2V5 107 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 UMAD1C9J7I0 102 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 SIRPB1O00241 398 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 IDH3GP51553 393 aaPredicted RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 RPS27AP62979 156 aaKnown RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 UBA52P62987 128 aaKnown RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 ARG2P78540 354 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 TCF15Q12870 199 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 KISS1Q15726 138 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 SSX2Q16385 188 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 PMS2CLQ68D20 193 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 ZNF100Q8IYN0 542 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 OR8U1Q8NH10 309 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 RPUSD4Q96CM3 377 aaKnown RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 DNTTIP1Q9H147 329 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 DEFB127Q9H1M4 99 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 PLK3Q9H4B4 646 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 MRPS18AQ9NVS2 196 aaKnown RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 FBXL17Q9UF56 701 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 SRPK3Q9UPE1 567 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 R4GMQ9 66 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 USP24Q9UPU5 2620 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 NSG1A0A0A6YYJ2 146 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 IGHV3-43A0A0B4J1X8 118 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 C5orf49A4QMS7 147 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 MEGF11A6BM72 1044 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 RFPL4AA6NLU0 287 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 RFPL4AL1F8VTS6 287 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 GEMIN2O14893 280 aaKnown RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 YIF1AO95070 293 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 SLC34A2O95436 690 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 ZNF728P0DKX0 622 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 IGHV3-43DP0DP04 118 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 DEFA4P12838 97 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 HAAOP46952 286 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 ZNF84P51523 738 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 GPM6AP51674 278 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 CARD18P57730 90 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 UBE2G2P60604 165 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 C17orf67Q0P5P2 114 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 FABP9Q0Z7S8 132 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 CLPPQ16740 277 aaPredicted RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 CYB5R2Q6BCY4 276 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 AAED1Q7RTV5 226 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 MRGPREQ86SM8 312 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 SUMF2Q8NBJ7 301 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 DEFB108BQ8NET1 73 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 OR2G3Q8NGZ4 309 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 RNF141Q8WVD5 230 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 RTN4IP1Q8WWV3 396 aaPredicted RBP4.4□□□□□ -1.71
CCDC39-204ENST00000476379 SSX3Q99909 188 aa4.4□□□□□ -1.71
CCDC39-204ENST00000476379 OCSTAMPQ9BR26 566 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms