RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 KLHDC8BQ8IXV7 354 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF679Q8IYX0 411 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 TMEM99Q8N816 258 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 EIF1ADQ8N9N8 165 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 DRAXINQ8NBI3 349 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 NECAP1Q8NC96 275 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 SLC24A4Q8NFF2 622 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 EEF1AKMT1Q8WVE0 214 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 SELENOMQ8WWX9 145 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 STMN2Q93045 179 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 TMEM19Q96HH6 336 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 SGK494Q96LW2 274 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF488Q96MN9 340 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 ECSITQ9BQ95 431 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 RBM38Q9H0Z9 239 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 OR51J1Q9H342 316 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 C1orf198Q9H425 327 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 HEXA-AS1Q9H8Q6 139 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 MRPL47Q9HD33 250 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 GPR173Q9NS66 373 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 ZCCHC3Q9NUD5 404 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 U3KQV3 271 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 MAGEB16A2A368 324 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF487B1APH4 448 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 LINC01619G3V211 115 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 H3BSA7 217 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 M0QZK8 103 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ARPC2O15144 300 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 FGFR1OPO95684 399 aaKnown RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 NUDT3O95989 172 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 KRT6BP04259 564 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 DUX4L4P0CJ87 422 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 CPA3P15088 417 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 COX7A1P24310 79 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 DUTP33316 252 aaKnown RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 KRT6CP48668 564 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 RGS4P49798 205 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ACTBP60709 375 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 RELQ04864 619 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 SLC34A1Q06495 639 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 GK2Q14410 553 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 OR8B8Q15620 311 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ODF4Q2M2E3 257 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 NDUFAF6Q330K2 333 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 LRRC23Q53EV4 343 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 XKR7Q5GH72 579 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 FGD3Q5JSP0 725 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF626Q68DY1 528 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 WBP2NLQ6ICG8 309 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 SLC48A1Q6P1K1 146 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 C8orf82Q6P1X6 216 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 FAM122CQ6P4D5 195 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 CORO6Q6QEF8 472 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 DLEU7Q6UYE1 221 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 MTERF4Q7Z6M4 381 aaKnown RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 MKXQ8IYA7 352 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 KATNAL2Q8IYT4 538 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 Q8N402 240 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 CCDC63Q8NA47 563 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF114Q8NC26 417 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 OR10AD1Q8NGE0 317 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 OR13C2Q8NGS9 318 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 OR5W2Q8NH69 310 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 SLC26A7Q8TE54 656 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 SLCO4A1Q96BD0 722 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 CNRIP1Q96F85 164 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF681Q96N22 645 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF583Q96ND8 569 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 TSSK2Q96PF2 358 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 PPP1R2P1Q96PQ5 205 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 QKIQ96PU8 341 aaKnown RBP eCLIP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 CENPKQ9BS16 269 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 PARD6BQ9BYG5 372 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 FNDC4Q9H6D8 234 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 C10orf88Q9H8K7 445 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 SDF2L1Q9HCN8 221 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 UBQLN4Q9NRR5 601 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 RMND1Q9NWS8 449 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 KAAG1Q9UBP8 84 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 BAIAP2L1Q9UHR4 511 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 PRPF19Q9UMS4 504 aaKnown RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 TBL2Q9Y4P3 447 aaKnown RBP3.49□□□□□ -1.85
HMGB1-207ENST00000468384 COX11Q9Y6N1 276 aa3.49□□□□□ -1.85
HMGB1-207ENST00000468384 TRAV38-1A0A0B4J264 116 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 NCF1BA6NI72 391 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-207ENST00000468384 NCF1CA8MVU1 366 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-207ENST00000468384 E9PBE3 544 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 PFDN6O15212 129 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 DEFB4AO15263 64 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF208O43345 1280 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 PSG1P11464 419 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 HLA-DMBP28068 263 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 GABRA3P34903 492 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 OR12D2P58182 307 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 PPP1CBP62140 327 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 SPIBQ01892 262 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 PPP1R8Q12972 351 aaKnown RBP3.48□□□□□ -1.85
HMGB1-207ENST00000468384 PDZK1IP1Q13113 114 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 HSP90AA4PQ58FG1 418 aa3.48□□□□□ -1.85
HMGB1-207ENST00000468384 CLEC12AQ5QGZ9 265 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms