RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 MED9Q9NWA0 146 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 OPN4Q9UHM6 478 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 ASAH2BP0C7U1 165 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 BATFQ16520 125 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 SLC26A10Q8NG04 563 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 OCIAD1Q9NX40 245 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 CST7O76096 145 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 PATE4P0C8F1 98 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 RNPS1Q15287 305 aaKnown RBP13.09□□□□□ -0.31
PTPRU-205ENST00000460170 SIGIRRQ6IA17 410 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 SSX9Q7RTT3 188 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 S100A7AQ86SG5 101 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 OR11G2Q8NGC1 345 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 ZNF107Q9UII5 783 aaPredicted RBP13.09□□□□□ -0.31
PTPRU-205ENST00000460170 GAB2Q9UQC2 676 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 EIF3IQ13347 325 aaKnown RBP13.09□□□□□ -0.31
PTPRU-205ENST00000460170 PRSS54Q6PEW0 395 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 MRGPREQ86SM8 312 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 VASH2Q86V25 355 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 KLHDC2Q9Y2U9 406 aa13.09□□□□□ -0.31
PTPRU-205ENST00000460170 H3BP45 60 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 MPLP40238 635 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 TMEM41BQ5BJD5 291 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 RPS4Y2Q8TD47 263 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 CIB3Q96Q77 187 aaPredicted RBP13.08□□□□□ -0.32
PTPRU-205ENST00000460170 ZNF727A8MUV8 499 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 RNASEK-C17orf49H0YIS7 233 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 H7BYZ3 331 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 SMIM10L1P0DMW3 83 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.08□□□□□ -0.32
PTPRU-205ENST00000460170 DEFB108BQ8NET1 73 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 RXFP4Q8TDU9 374 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 SMIM10Q96HG1 83 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 TMPRSS13Q9BYE2 586 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 SOCS1O15524 211 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 IFI6P09912 130 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 TMIGD3P0DMS9 266 aaPredicted RBP13.08□□□□□ -0.32
PTPRU-205ENST00000460170 IL3RAP26951 378 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 AGFG1P52594 562 aaKnown RBP13.08□□□□□ -0.32
PTPRU-205ENST00000460170 LIMK1P53667 647 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 CISD2Q8N5K1 135 aaKnown RBP13.08□□□□□ -0.32
PTPRU-205ENST00000460170 M1APQ8TC57 530 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 KCNE5Q9UJ90 142 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 LAMP3Q9UQV4 416 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 APOA2P02652 100 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 PRDX4Q13162 271 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 ZNF787Q6DD87 383 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 EDARADDQ8WWZ3 215 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 GALMQ96C23 342 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 IER2Q9BTL4 223 aa13.08□□□□□ -0.32
PTPRU-205ENST00000460170 IL9P15248 144 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 PJVKQ0ZLH3 352 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 LGALSLQ3ZCW2 172 aaPredicted RBP13.07□□□□□ -0.32
PTPRU-205ENST00000460170 CLRN3Q8NCR9 226 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 A0A1B0GTQ1 180 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SHISA7A6NL88 538 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 GABRA1P14867 456 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 EFNB2P52799 333 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 Q8IYB0 196 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 COMMD1Q8N668 190 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 C15orf54Q8N8G6 183 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SCCPDHQ8NBX0 429 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 PECRQ9BY49 303 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 NTMQ9P121 344 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SF3B6Q9Y3B4 125 aaKnown RBP13.07□□□□□ -0.32
PTPRU-205ENST00000460170 LOC285556D6RIA3 1793 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 LCTP09848 1927 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 F6UZH7 168 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 ADAP1O75689 374 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SCAF4O95104 1147 aaKnown RBP13.07□□□□□ -0.32
PTPRU-205ENST00000460170 CRYBA2P53672 197 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SSX2Q16385 188 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SMIM21Q3B7S5 101 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 GGNBP1Q5YKI7 109 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 OR2T2Q6IF00 324 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 OR8U1Q8NH10 309 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 MRPS24Q96EL2 167 aaKnown RBP13.07□□□□□ -0.32
PTPRU-205ENST00000460170 GPX7Q96SL4 187 aaPredicted RBP13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SF3B5Q9BWJ5 86 aaKnown RBP13.07□□□□□ -0.32
PTPRU-205ENST00000460170 NAA60Q9H7X0 242 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 FSCN3Q9NQT6 498 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 SSUH2Q9Y2M2 353 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 hCG_1809904A0A1W2PP81 198 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 A0A1W2PPE2 198 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 A0A1W2PR64 198 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 A0A1W2PRV1 198 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 PGA3P0DJD8 388 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 CLDN23Q96B33 292 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 ACTR3CQ9C0K3 210 aaPredicted RBP13.07□□□□□ -0.32
PTPRU-205ENST00000460170 MMP26Q9NRE1 261 aa13.07□□□□□ -0.32
PTPRU-205ENST00000460170 PRRG2O14669 202 aa13.06□□□□□ -0.32
PTPRU-205ENST00000460170 NGFRP08138 427 aa13.06□□□□□ -0.32
PTPRU-205ENST00000460170 OR6S1Q8NH40 331 aa13.06□□□□□ -0.32
PTPRU-205ENST00000460170 PATZ1Q9HBE1 687 aaKnown RBP13.06□□□□□ -0.32
PTPRU-205ENST00000460170 NDRG3Q9UGV2 375 aa13.06□□□□□ -0.32
PTPRU-205ENST00000460170 CLEC18AA5D8T8 446 aa13.06□□□□□ -0.32
PTPRU-205ENST00000460170 PPP5D1E7EU14 171 aa13.06□□□□□ -0.32
PTPRU-205ENST00000460170 DXOO77932 396 aaKnown RBP13.06□□□□□ -0.32
PTPRU-205ENST00000460170 TXNDC12O95881 172 aa13.06□□□□□ -0.32
PTPRU-205ENST00000460170 MT-CO3P00414 261 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms