RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ZNF528Q3MIS6 628 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 Q3ZCU0 254 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 ACSM6Q6P461 480 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF680Q8NEM1 530 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 SERTM1A2A2V5 107 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 ADAM20O43506 726 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 CTLA4P16410 223 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 VMA21Q3ZAQ7 101 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 C17orf47Q8NEP4 570 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 CXorf51AA0A1B0GTR3 108 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 PLPP3O14495 311 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 ADAM10O14672 748 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 SLC16A12Q6ZSM3 486 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 ABI3BPQ7Z7G0 1075 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 BCL2L11O43521 198 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 C4orf45Q96LM5 186 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 LHX9Q9NQ69 397 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 ZBTB44Q8NCP5 570 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 PLAC1Q9HBJ0 212 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 OPRK1P41145 380 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 RPEQ96AT9 228 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 HIST1H1DP16402 221 aaKnown RBP15.29■□□□□ 0.04
PTPRF-209ENST00000438120 MYOZ1Q9NP98 299 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-209ENST00000438120 CD96P40200 585 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 TNFAIP6P98066 277 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-209ENST00000438120 HFEQ30201 348 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 C1QL3Q5VWW1 255 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 CDX2Q99626 313 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-209ENST00000438120 CRYBB2P43320 205 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 LPAR6P43657 344 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 CCDC190Q86UF4 302 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 MRGPRDQ8TDS7 321 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 COX14Q96I36 57 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 GABRG3Q99928 467 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 CYSLTR2Q9NS75 346 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 CLEC5AQ9NY25 188 aa15.29■□□□□ 0.04
PTPRF-209ENST00000438120 SCN7AQ01118 1682 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF205O95201 554 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 CYC1P08574 325 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 TIGD3Q6B0B8 471 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 GLDNQ6ZMI3 551 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-209ENST00000438120 SIGLECL1Q8N7X8 197 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 DHRS9Q9BPW9 319 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 POU2F2P09086 479 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 PPP1CBP62140 327 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 C11orf87Q6NUJ2 197 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 OR13G1Q8NGZ3 307 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 TM4SF19Q96DZ7 209 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 NHSQ6T4R5 1651 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 GOSR1O95249 250 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 RPS4XP62701 263 aaKnown RBP15.28■□□□□ 0.04
PTPRF-209ENST00000438120 CDC20Q12834 499 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 SIRT3Q9NTG7 399 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-209ENST00000438120 MBD1Q9UIS9 605 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-209ENST00000438120 CD160O95971 181 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 ERVFC1-1P60608 527 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 C11orf42Q8N5U0 333 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 CNTD2Q9H8S5 307 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 GOLT1BQ9Y3E0 138 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 NUDT19A8MXV4 375 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 HRKO00198 91 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 FPR2P25090 351 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 OR6S1Q8NH40 331 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 OR2D2Q9H210 308 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 OR5V1Q9UGF6 321 aa15.28■□□□□ 0.04
PTPRF-209ENST00000438120 XKRY2A2RUG3 117 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 SH2D7A6NKC9 451 aaPredicted RBP15.27■□□□□ 0.04
PTPRF-209ENST00000438120 BTNL3Q6UXE8 466 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 Q8IYB0 196 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 ARRDC1Q8N5I2 433 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 SLC26A1Q9H2B4 701 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 PLPP2O43688 288 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 LIMS3P0CW19 117 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 LIMS4P0CW20 117 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 CNN1P51911 297 aaKnown RBP15.27■□□□□ 0.04
PTPRF-209ENST00000438120 XAF1Q6GPH4 301 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 PATE3B3GLJ2 98 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 FAM157AC9JC47 383 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 DUS4LO95620 317 aaKnown RBP15.27■□□□□ 0.04
PTPRF-209ENST00000438120 SSBP1Q04837 148 aaKnown RBP15.27■□□□□ 0.04
PTPRF-209ENST00000438120 CD226Q15762 336 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 SSX1Q16384 188 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 GVQW1Q8N7I0 195 aa15.27■□□□□ 0.04
PTPRF-209ENST00000438120 SPINK4O60575 86 aa15.27■□□□□ 0.03
PTPRF-209ENST00000438120 EML2O95834 649 aa15.27■□□□□ 0.03
PTPRF-209ENST00000438120 TMIGD3P0DMS9 266 aaPredicted RBP15.27■□□□□ 0.03
PTPRF-209ENST00000438120 CALCRP30988 508 aa15.27■□□□□ 0.03
PTPRF-209ENST00000438120 S100A4P26447 101 aaKnown RBP15.27■□□□□ 0.03
PTPRF-209ENST00000438120 GZMKP49863 264 aa15.27■□□□□ 0.03
PTPRF-209ENST00000438120 PPP1R1AQ13522 171 aa15.27■□□□□ 0.03
PTPRF-209ENST00000438120 TCAPO15273 167 aa15.26■□□□□ 0.03
PTPRF-209ENST00000438120 OR8D4Q8NGM9 314 aa15.26■□□□□ 0.03
PTPRF-209ENST00000438120 RHOFQ9HBH0 211 aa15.26■□□□□ 0.03
PTPRF-209ENST00000438120 GAR1Q9NY12 217 aaKnown RBP15.26■□□□□ 0.03
PTPRF-209ENST00000438120 MYO5AQ9Y4I1 1855 aaKnown RBP15.26■□□□□ 0.03
PTPRF-209ENST00000438120 CTAG2O75638 210 aa15.26■□□□□ 0.03
PTPRF-209ENST00000438120 CPN1P15169 458 aa15.26■□□□□ 0.03
PTPRF-209ENST00000438120 MAGEA5P43359 124 aa15.26■□□□□ 0.03
PTPRF-209ENST00000438120 SLIRPQ9GZT3 109 aaKnown RBP15.26■□□□□ 0.03
PTPRF-209ENST00000438120 ZDHHC11Q9H8X9 412 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms