RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SYNGR1O43759 233 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 NXPH2O95156 264 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 NRASP01111 189 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 SLC2A5P22732 501 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 HAAOP46952 286 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 CDK5Q00535 292 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 ASRGL1Q7L266 308 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 LYG1Q8N1E2 194 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 POC1AQ8NBT0 407 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 OR5A2Q8NGI9 324 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 PPP1R35Q8TAP8 253 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 SLC25A19Q9HC21 320 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 FBLN5Q9UBX5 448 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 MEX3AA1L020 520 aaKnown RBP11.8□□□□□ -0.52
SDC1-204ENST00000429035 LOC110117498-PIK3R3F6TDL0 507 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 J3QT63 122 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 M0R129 80 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 MTRF1O75570 445 aaKnown RBP11.8□□□□□ -0.52
SDC1-204ENST00000429035 DHRS3O75911 302 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 ANXA8P13928 327 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 ATP6V1B1P15313 513 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 EFNB2P52799 333 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 ERVFRD-1P60508 538 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 CBX1P83916 185 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 ZNF273Q14593 569 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 BCL2L15Q5TBC7 163 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 PLEKHG7Q6ZR37 379 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 ZNF561Q8N587 486 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 CD177Q8N6Q3 437 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 CCDC197Q8NCU1 140 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 OR2T27Q8NH04 317 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 TRMT10AQ8TBZ6 339 aaKnown RBP11.8□□□□□ -0.52
SDC1-204ENST00000429035 PPP1R14AQ96A00 147 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 SDSLQ96GA7 329 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 OR8B4Q96RC9 309 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 CNN2Q99439 309 aaKnown RBP11.8□□□□□ -0.52
SDC1-204ENST00000429035 NPFFR1Q9GZQ6 430 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 HEXA-AS1Q9H8Q6 139 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 USE1Q9NZ43 259 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 POLDIP2Q9Y2S7 368 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 DSCAML1Q8TD84 2053 aa11.8□□□□□ -0.52
SDC1-204ENST00000429035 hCG_1809904A0A1W2PP81 198 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 A0A1W2PPE2 198 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 A0A1W2PR64 198 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 A0A1W2PRV1 198 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 A6NIN4 97 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 ACOD1A6NK06 481 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 AQP12BA6NM10 295 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 H3BSH0 61 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 CHST1O43916 411 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 PRB2P02812 416 aaPredicted RBP11.79□□□□□ -0.52
SDC1-204ENST00000429035 PGA5P0DJD9 388 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 PRDX2P32119 198 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 FLOT2Q14254 428 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 NSUN5P1Q3KNT7 163 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 ARSJQ5FYB0 599 aaPredicted RBP11.79□□□□□ -0.52
SDC1-204ENST00000429035 DEGS2Q6QHC5 323 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 ZNF573Q86YE8 665 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 AQP12AQ8IXF9 295 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 ZNF679Q8IYX0 411 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 ASCC1Q8N9N2 400 aaKnown RBP11.79□□□□□ -0.52
SDC1-204ENST00000429035 OR5K1Q8NHB7 308 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 ASB17Q8WXJ9 295 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 RANBP3Q9H6Z4 567 aaPredicted RBP11.79□□□□□ -0.52
SDC1-204ENST00000429035 PAPOLBQ9NRJ5 636 aaKnown RBP11.79□□□□□ -0.52
SDC1-204ENST00000429035 ABCB10Q9NRK6 738 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 RASL12Q9NYN1 266 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 NUFIP1Q9UHK0 495 aaKnown RBP11.79□□□□□ -0.52
SDC1-204ENST00000429035 TMEM14AQ9Y6G1 99 aa11.79□□□□□ -0.52
SDC1-204ENST00000429035 MAGEB4O15481 346 aaPredicted RBP11.78□□□□□ -0.52
SDC1-204ENST00000429035 FKBP6O75344 327 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 ZNF254O75437 659 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 TTRP02766 147 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 ARG1P05089 322 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 KIR2DS4P43632 304 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 EDDM3BP56851 147 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 CXCR4P61073 352 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 FAM189A2Q15884 450 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 ODF4Q2M2E3 257 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 CLVS2Q5SYC1 327 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 ZBTB37Q5TC79 503 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 TMEM200BQ69YZ2 307 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 C11orf88Q6PI97 169 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 ZNF322Q6U7Q0 402 aaPredicted RBP11.78□□□□□ -0.52
SDC1-204ENST00000429035 BCDIN3DQ7Z5W3 292 aaKnown RBP11.78□□□□□ -0.52
SDC1-204ENST00000429035 LHFPL4Q7Z7J7 247 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 SLC35F2Q8IXU6 374 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 APOL4Q9BPW4 351 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 PRRG3Q9BZD7 231 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 MEGF9Q9H1U4 602 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 MOB1AQ9H8S9 216 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 PLEKHA1Q9HB21 404 aa11.78□□□□□ -0.52
SDC1-204ENST00000429035 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.78□□□□□ -0.52
SDC1-204ENST00000429035 PRKYO43930 277 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 PEX14O75381 377 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 FBXO24O75426 580 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 INMTO95050 263 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 RPP14O95059 124 aaKnown RBP11.77□□□□□ -0.53
SDC1-204ENST00000429035 IGLV3-1P01715 115 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 OPN1MWP04001 364 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms