RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 ALKAL2Q6UX46 152 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 FAM131AQ6UXB0 335 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 CD300LGQ6UXG3 332 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 UNQ9370/PRO34162Q6UXP9 181 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 CYHR1Q6ZMK1 362 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 ZFP2Q6ZN57 461 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 LANCL3Q6ZV70 420 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 BHLHA15Q7RTS1 189 aaPredicted RBP2.33□□□□□ -2.04
LINC01040-201ENST00000425048 SMIM15Q7Z3B0 74 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 MRPL52Q86TS9 123 aaKnown RBP2.33□□□□□ -2.04
LINC01040-201ENST00000425048 CNTN4Q8IWV2 1026 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 HS3ST5Q8IZT8 346 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 BLIDQ8IZY5 108 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 PQLC3Q8N755 202 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 C15orf54Q8N8G6 183 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 C19orf18Q8NEA5 215 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 PXT1Q8NFP0 134 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 OR5T1Q8NG75 326 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 OR5D18Q8NGL1 313 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 OR2G2Q8NGZ5 317 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 NUBPLQ8TB37 319 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 C16orf78Q8WTQ4 265 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 APH1BQ8WW43 257 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 LCN9Q8WX39 176 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 ACOT12Q8WYK0 555 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 OR1E3Q8WZA6 343 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 PHYHIPQ92561 330 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 AP3S1Q92572 193 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 THRSPQ92748 146 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 GGHQ92820 318 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 ECHDC3Q96DC8 303 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 CERS2Q96G23 380 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 CPB2Q96IY4 423 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 SMIM8Q96KF7 97 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 PACRGQ96M98 296 aaPredicted RBP2.33□□□□□ -2.04
LINC01040-201ENST00000425048 NOL4LQ96MY1 436 aaPredicted RBP2.33□□□□□ -2.04
LINC01040-201ENST00000425048 SMIM14Q96QK8 99 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 PITX2Q99697 317 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 HOPXQ9BPY8 73 aaPredicted RBP2.33□□□□□ -2.04
LINC01040-201ENST00000425048 IL22Q9GZX6 179 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 ZDHHC6Q9H6R6 413 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 NRN1Q9NPD7 142 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 ISYNA1Q9NPH2 558 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 RAB20Q9NX57 234 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 SCN3BQ9NY72 215 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 RASL12Q9NYN1 266 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 TRPC4Q9UBN4 977 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 ZNF222Q9UK12 451 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 SLC35A3Q9Y2D2 325 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 NHSQ6T4R5 1651 aa2.33□□□□□ -2.04
LINC01040-201ENST00000425048 COL5A3P25940 1745 aaPredicted RBP2.33□□□□□ -2.04
LINC01040-201ENST00000425048 NYNRINQ9P2P1 1898 aaKnown RBP2.33□□□□□ -2.04
LINC01040-201ENST00000425048 ANKRD36A6QL64 1941 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 MCM3APO60318 1980 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 NINQ8N4C6 2090 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 A0A087WUJ7 227 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 FABP12A6NFH5 140 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 A6NIZ1 184 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 HMSDA8MTL9 139 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 BBIP1A8MTZ0 92 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 ZNF670-ZNF695F2Z2N8 137 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 M0R143 59 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 IMPA2O14732 288 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 COCHO43405 550 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 TCF21O43680 179 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 OR2T1O43869 369 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 RP2O75695 350 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 SC5DO75845 299 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 GLCEO94923 617 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 YIF1AO95070 293 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 AHSA1O95433 338 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 CLDN9O95484 217 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 AP2A1O95782 977 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 CYB5R3P00387 301 aaPredicted RBP2.32□□□□□ -2.04
LINC01040-201ENST00000425048 F10P00742 488 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 TIMP1P01033 207 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 PTHP01270 115 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 IFNA17P01571 189 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 MT-ND4LP03901 98 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 ALDOBP05062 364 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 BCHEP06276 602 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 CRYGCP07315 174 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 C8GP07360 202 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 IGFBP1P08833 259 aaPredicted RBP2.32□□□□□ -2.04
LINC01040-201ENST00000425048 TSPAN19P0C672 248 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 SLC35G4P0C7Q5 338 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 C1GALT1C1LP0DN25 315 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 ZNF35P13682 527 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 NCK1P16333 377 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 HLA-GP17693 338 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 TUBG1P23258 451 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 DTYMKP23919 212 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 HTR1EP28566 365 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 IFNGR2P38484 337 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 ACAA2P42765 397 aaKnown RBP2.32□□□□□ -2.04
LINC01040-201ENST00000425048 CRYBB2P43320 205 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 GPR4P46093 362 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 RGS4P49798 205 aa2.32□□□□□ -2.04
LINC01040-201ENST00000425048 IDH3GP51553 393 aaPredicted RBP2.32□□□□□ -2.04
LINC01040-201ENST00000425048 FGF8P55075 233 aaPredicted RBP2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms