RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 FABP1P07148 127 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 HCKP08631 526 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 OR8U9P0C7N5 309 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A15PP0C7V4 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A13PP0C7W8 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A14PP0C7W9 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A24PP0C7X0 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CEACAM1P13688 526 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 EIF2S3P41091 472 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 DHPSP49366 369 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FBXW4P57775 412 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RND3P61587 244 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TFF2Q03403 129 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RSU1Q15404 277 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 GGNBP1Q5YKI7 109 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RPUSD3Q6P087 351 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 SYT13Q7L8C5 426 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 LINC00469Q8N7U9 141 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC38A9Q8NBW4 561 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 BHLHE23Q8NDY6 225 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 GJC3Q8NFK1 279 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 SEMA6DQ8NFY4 1073 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 OR51T1Q8NGJ9 327 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 OR5L2Q8NGL0 311 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 OR8U1Q8NH10 309 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TCTEX1D2Q8WW35 142 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 C14orf79Q96F83 325 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CLCC1Q96S66 551 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 S100A13Q99584 98 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 NKX3-1Q99801 234 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 NRSN2Q9GZP1 204 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 NELFAQ9H3P2 528 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 SIRT7Q9NRC8 400 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 NECAP2Q9NVZ3 263 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 MED29Q9NX70 200 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF319Q9P2F9 582 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 PADI1Q9ULC6 663 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 MYO7AQ13402 2215 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TNRC6AQ8NDV7 1962 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 IGHV1OR21-1A0A087WYE8 117 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 PCP4L1A6NKN8 68 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RPL36A-HNRNPH2H7BZ11 118 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 WRBO00258 174 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 PPIHO43447 177 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 VAMP5O95183 116 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FBP1P09467 338 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 PF4V1P10720 104 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 NME2P22392 152 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 IGFBP4P22692 258 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 UCP1P25874 307 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 DUSP1P28562 367 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 BLVRBP30043 206 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF41P51814 821 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 HNRNPKP61978 463 aaKnown RBP eCLIP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 SNRPEP62304 92 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ACY1Q03154 408 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CLINT1Q14677 625 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 HIKESHIQ53FT3 197 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 AWAT1Q58HT5 328 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM42Q69YG0 159 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 POMZP3Q6PJE2 187 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 HEPN1Q6WQI6 88 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 LIAT1Q6ZQX7 453 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 METTL27Q8N6F8 245 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 NINJ1Q92982 152 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 MOB3AQ96BX8 217 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF501Q96CX3 271 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 MSI2Q96DH6 328 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 LYZL4Q96KX0 146 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 GNRHR2Q96P88 292 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RSRP1Q9BUV0 290 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RGCCQ9H4X1 137 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 C19orf12Q9NSK7 152 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM242Q9NWH2 141 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 DMRT1Q9Y5R6 373 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TRAV1-1A0A0B4J248 108 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 B4DEV8 164 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 LINC01565O15544 149 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 DUX1O43812 170 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 PRKNO60260 465 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 PITX3O75364 302 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 IFNA17P01571 189 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 SERPINA5P05154 406 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 S100A6P06703 90 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OR8U8P0C7N1 319 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 MSR1P21757 451 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 CD38P28907 300 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 SMAD4Q13485 552 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 C1orf61Q13536 156 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 PMS2P11Q13670 270 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF266Q14584 549 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 RNPS1Q15287 305 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 EXT1Q16394 746 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OR2A2Q6IF42 318 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 ANKRD37Q7Z713 158 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM219AQ8IW50 185 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 LGI3Q8N145 548 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 BOLLQ8N9W6 283 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms