RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FGF12P61328 243 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 TSTQ16762 297 aaKnown RBP5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF880Q6PDB4 577 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 MKXQ8IYA7 352 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 RDH10Q8IZV5 341 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 TMEM106AQ96A25 262 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 TOLLIPQ9H0E2 274 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 UNKLQ9H9P5 680 aaKnown RBP5.87□□□□□ -1.47
LIMA1-202ENST00000394943 HMG20AQ9NP66 347 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 NOX4Q9NPH5 578 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 BRD7Q9NPI1 651 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 MTCH1Q9NZJ7 389 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ANAPC10Q9UM13 185 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 COL12A1Q99715 3063 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 SVILO95425 2214 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 SLC17A2O00624 439 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CYB5AP00167 134 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CD2P06729 351 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 AMY2BP19961 511 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 NKPD1Q17RQ9 610 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 TIMM50Q3ZCQ8 353 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 Q6ZS49 121 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 C1orf122Q6ZSJ8 110 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 NR2C2APQ86WQ0 139 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 C1orf87Q8N0U7 546 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 OR14A2Q96R54 314 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 PATZ1Q9HBE1 687 aaKnown RBP5.86□□□□□ -1.47
LIMA1-202ENST00000394943 TMEM165Q9HC07 324 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 MSL2Q9HCI7 577 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 SNTG1Q9NSN8 517 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 TAS2R4Q9NYW5 299 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 A3GALT2U3KPV4 340 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CELSR2Q9HCU4 2923 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 DSCAML1Q8TD84 2053 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 OOEPA6NGQ2 149 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF780AO75290 641 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF737O75373 536 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 DIRAS3O95661 229 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 OCM2P0CE71 109 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 EGR1P18146 543 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 GNALP38405 381 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 KCNJ3P48549 501 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 BTG1P62324 171 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 GPR176Q14439 515 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 MED22Q15528 200 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 KISS1Q15726 138 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 KCNJ8Q15842 424 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 LIPKQ5VXJ0 399 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 OR2Z1Q8NG97 314 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 FAM216AQ8WUB2 273 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 KCTD12Q96CX2 325 aaKnown RBP5.86□□□□□ -1.47
LIMA1-202ENST00000394943 PIMREGQ9BSJ6 248 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 SLC7A11Q9UPY5 501 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 ALPK2Q86TB3 2170 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 ANXA2P2A6NMY6 339 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CLDN25C9JDP6 229 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 SIGLEC5O15389 551 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CGB3P0DN86 165 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CGB7P0DN87 165 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CALCBP10092 127 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 BLMHQ13867 455 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF561Q8N587 486 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CHST4Q8NCG5 386 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 OR13C5Q8NGS8 318 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF671Q8TAW3 534 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF596Q8TC21 504 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 FAM71F1Q96KD3 344 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-202ENST00000394943 GAFA1Q96PS6 74 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 TTTY10Q9BZA0 68 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 FZR1Q9UM11 496 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 CEPT1Q9Y6K0 416 aa5.86□□□□□ -1.47
LIMA1-202ENST00000394943 UNC79Q9P2D8 2635 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF732B4DXR9 585 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 AIPO00170 330 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 PDCD5O14737 125 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 CDKN1AP38936 164 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 PTGFRP43088 359 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 DLX6P56179 175 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 MPV17LQ2QL34 196 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 LINC00299Q6ZSB3 139 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 OR6M1Q8NGM8 313 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 OR11L1Q8NGX0 322 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 PAPOLGQ9BWT3 736 aaKnown RBP5.85□□□□□ -1.47
LIMA1-202ENST00000394943 PRDM13Q9H4Q3 707 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 MIOXQ9UGB7 285 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 HSF4Q9ULV5 492 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 WIPI2Q9Y4P8 454 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 IGKV1D-17A0A075B6S4 117 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 A0A0A6YYH2 397 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 A6NJ64 397 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF20P17024 532 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 GATA3P23771 443 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 ZMYND11Q15326 602 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 MPPED2Q15777 294 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 DGUOKQ16854 277 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 CLEC12BQ2HXU8 276 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 HSD17B12Q53GQ0 312 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 PLCXD3Q63HM9 321 aa5.85□□□□□ -1.47
LIMA1-202ENST00000394943 METAP1DQ6UB28 335 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-202ENST00000394943 C9orf139Q6ZV77 190 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms