RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 CST2P09228 141 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 TBPP20226 339 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 FCGR2CP31995 323 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 MECP2P51608 486 aaKnown RBP12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 H3F3CQ6NXT2 135 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 FAM122BQ7Z309 247 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 TMEM100Q9NV29 134 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 ZMIZ1Q9ULJ6 1067 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 BPTFQ12830 3046 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 GLAP06280 429 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 OR4E1P0C645 316 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 FUT3P21217 361 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 SCAND1P57086 179 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 C9orf62Q8N4C0 152 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 OR10J5Q8NHC4 309 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 SLAMF9Q96A28 289 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 OPA3Q9H6K4 179 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 CACNA1BQ00975 2339 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 TMEM200CA6NKL6 621 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 TTRP02766 147 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 HPXP02790 462 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 PRDX4Q13162 271 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 CATR1Q13166 79 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 FAM27BQ5VT28 67 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 RGS7BPQ6MZT1 257 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF529Q6P280 563 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 BRICD5Q6PL45 260 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 CXorf67Q86X51 503 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 NANPQ8TBE9 248 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 ABHD5Q8WTS1 349 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 ADAT3Q96EY9 351 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 EGLN1Q9GZT9 426 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 DOCK7Q96N67 2140 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 CDK2AP1O14519 115 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 WDR1O75083 606 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 PGA4P0DJD7 388 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 PGA3P0DJD8 388 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 HIST1H1DP16402 221 aaKnown RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 NME2P22392 152 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 OMGP23515 440 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 EIF2S3P41091 472 aaKnown RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 CD200R1LQ6Q8B3 271 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 OR11H7Q8NGC8 314 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 TERB2Q8NHR7 220 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 PGLYRP3Q96LB9 341 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 CYB5R1Q9UHQ9 305 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 SF3B6Q9Y3B4 125 aaKnown RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 PKDREJQ9NTG1 2253 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 A0A1B0GUH1 482 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 K7EPK0 472 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 RAMP1O60894 148 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 TUSC2O75896 110 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 TMIGD3P0DMS9 266 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 CAMLGP49069 296 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 ROM1Q03395 351 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF528Q3MIS6 628 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 C6orf201Q7Z4U5 140 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 LGI3Q8N145 548 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 FAM71E2Q8N5Q1 922 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 SUMF1Q8NBK3 374 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF519Q8TB69 540 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 WDR89Q96FK6 387 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 MARVELD1Q9BSK0 173 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 OR2H1Q9GZK4 316 aa12.48□□□□□ -0.41
SHROOM1-203ENST00000378679 SPINT2O43291 252 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 RFPL3SP0C7P2 107 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 MPGP29372 298 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 ECI1P42126 302 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 SSBP1Q04837 148 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 ALKBH6Q3KRA9 238 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 OR2W3Q7Z3T1 314 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 LRRTM1Q86UE6 522 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 SVBPQ8N300 66 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 ADPRHL1Q8NDY3 354 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 OR2AK2Q8NG84 335 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 ST7LQ8TDW4 575 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 TECTBQ96PL2 329 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 PFDN5Q99471 154 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 FZR1Q9UM11 496 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 LRRC30A6NM36 301 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 TPT1P13693 172 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 HIKESHIQ53FT3 197 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 TMEM229BQ8NBD8 167 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 OR6K3Q8NGY3 331 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 H1FXQ92522 213 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 NMNAT2Q9BZQ4 307 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF230Q9UIE0 474 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 TRAV20A0A0B4J274 112 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 NTN3O00634 580 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 CFDP00746 253 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 CTXN2P0C2S0 81 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 NFYBP25208 207 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 PNLIPRP3Q17RR3 467 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 ADAM5Q6NVV9 412 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 SCARB1Q8WTV0 552 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 TMED6Q8WW62 240 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 EXTL1Q92935 676 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 FAAP24Q9BTP7 215 aa12.47□□□□□ -0.41
SHROOM1-203ENST00000378679 NKX6-2Q9C056 277 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms