RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GNRHR2Q96P88 292 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 ZDHHC11Q9H8X9 412 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 COL11A1P12107 1806 aaPredicted RBP10.2□□□□□ -0.78
PTPRF-203ENST00000372407 CACNA1IQ9P0X4 2223 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 MYF5P13349 255 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 MPGP29372 298 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 BPIFB3P59826 476 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 CCL7P80098 99 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 PWWP2BQ6NUJ5 590 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 TSPAN32Q96QS1 320 aa10.2□□□□□ -0.78
PTPRF-203ENST00000372407 ANKRD20A5PA0PJZ0 165 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 HOXB3P14651 431 aaPredicted RBP10.19□□□□□ -0.78
PTPRF-203ENST00000372407 AKR1C3P42330 323 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 PRDX4Q13162 271 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 RAB32Q13637 225 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 CADM4Q8NFZ8 388 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 MOGAT1Q96PD6 335 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 MMP26Q9NRE1 261 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 MRPL22Q9NWU5 206 aaKnown RBP10.19□□□□□ -0.78
PTPRF-203ENST00000372407 IGHV1OR21-1A0A087WYE8 117 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 TMEM30CPA0ZSE6 113 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 C9orf170A2RU37 121 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 PHOX2AO14813 284 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 GPM6AP51674 278 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 RPL11P62913 178 aaKnown RBP10.19□□□□□ -0.78
PTPRF-203ENST00000372407 CD300CQ08708 224 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF528Q3MIS6 628 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 RPL7L1Q6DKI1 246 aaKnown RBP10.19□□□□□ -0.78
PTPRF-203ENST00000372407 EDEM2Q9BV94 578 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 KIAA1456Q9P272 454 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 FFAR1O14842 300 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 GPR37O15354 613 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 GPANK1O95872 356 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 SFTA3P0C7M3 94 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 FGF7P21781 194 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 MOB1BQ7L9L4 216 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 SPRED2Q7Z698 418 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 CARFQ8N187 725 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 RAB40CQ96S21 281 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 ATG2BQ96BY7 2078 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 OGG1O15527 345 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 PDCD6O75340 191 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 TNFSF15O95150 251 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 FBP1P09467 338 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 CT62P0C5K7 136 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 TMEM104Q8NE00 496 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 OR1L3Q8NH93 324 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 FAM173AQ9BQD7 235 aa10.19□□□□□ -0.78
PTPRF-203ENST00000372407 UNC13CQ8NB66 2214 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 SHISA7A6NL88 538 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 H3BMH7 237 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 SPATA46Q5T0L3 261 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 PRSS54Q6PEW0 395 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 DGAT2L6Q6ZPD8 337 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 SMRP1Q8NCR6 262 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 KISS1RQ969F8 398 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 RPP25Q9BUL9 199 aaKnown RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 UQCC1Q9NVA1 299 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 OCIAD1Q9NX40 245 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 NQO2P16083 231 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF32P17041 273 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 TIAL1Q01085 375 aaKnown RBP eCLIP10.18□□□□□ -0.787e-10■□□□□ 9
PTPRF-203ENST00000372407 ZNF816Q0VGE8 651 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 HLA-BQ31612 363 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 PLAC9Q5JTB6 97 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 MRM1Q6IN84 353 aaKnown RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 JMJD6Q6NYC1 403 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF429Q86V71 674 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 MCHR2Q969V1 340 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 CLDN23Q96B33 292 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 ERRFI1Q9UJM3 462 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 CCDC187A0A096LP49 1063 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 M0R1B8 84 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 NOVA1P51513 510 aaKnown RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 IL11RAQ14626 422 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 RGS7BPQ6MZT1 257 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 WFDC8Q8IUA0 241 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 FAAP24Q9BTP7 215 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 TOLLIPQ9H0E2 274 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 TMPRSS5Q9H3S3 457 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 FAM60AQ9NP50 221 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 MRM2Q9UI43 246 aaKnown RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 XKRY2A2RUG3 117 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 SEC14L6B5MCN3 397 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 CLDN34H7C241 214 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 HSBP1O75506 76 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 LY86O95711 162 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 HPP00738 406 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF17P17021 662 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 HNF1AP20823 631 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 SLC25A30Q5SVS4 291 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF770Q6IQ21 691 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 C6orf201Q7Z4U5 140 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 NDFIP1Q9BT67 221 aa10.18□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF230Q9UIE0 474 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-203ENST00000372407 TRGV10A0A0A0MS01 117 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 PLPP3O14495 311 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 CTDSPLO15194 276 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 IGHA1P01876 353 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 POU2F2P09086 479 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms