RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 LCN8Q6JVE9 175 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 NANOGP8Q6NSW7 305 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 C16orf89Q6UX73 402 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 DPY19L2P2Q6ZN68 376 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 THAP5Q7Z6K1 395 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 ZDHHC21Q8IVQ6 265 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 ZNF695Q8IW36 515 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 RNF113BQ8IZP6 322 aaKnown RBP6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 ISOC1Q96CN7 298 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 TPD52L3Q96J77 140 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 RBM14Q96PK6 669 aaKnown RBP6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 ERMAPQ96PL5 475 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 TSC22D3Q99576 134 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 FNDC11Q9BVV2 318 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 KRTAP9-2Q9BYQ4 174 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 OR51I2Q9H344 312 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 HHLA2Q9UM44 414 aa6.65□□□□□ -1.34
HMGB1P39-201ENST00000366304 TMEM120BA0PK00 339 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 TRIM64CA6NLI5 447 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 LINC01548A6NM66 108 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 PRR23D1E9PI22 279 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 FXYD1O00168 92 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 TBX1O43435 398 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 XRCC2O43543 280 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 OR2F2O95006 317 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 LY86O95711 162 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 HLA-DQA2P01906 255 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 VIMP08670 466 aaKnown RBP6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 PRR23D2P0DMB1 279 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 TROVE2P10155 538 aaKnown RBP eCLIP6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 PRDX2P32119 198 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 GNALP38405 381 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 GPM6AP51674 278 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 KRT72Q14CN4 511 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 ZNF260Q3ZCT1 412 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 SLC36A3Q495N2 470 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 DNM1P34Q6PK57 102 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 ACP7Q6ZNF0 438 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 CBLL1Q75N03 491 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 C16orf82Q7Z2V1 217 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 DCXRQ7Z4W1 244 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 BATF2Q8N1L9 274 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 OR51L1Q8NGJ5 315 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 OR4P4Q8NGL7 312 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 OR13D1Q8NGV5 346 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 MISP3Q96FF7 219 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 RNF170Q96K19 258 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 OR8B4Q96RC9 309 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 KCNJ15Q99712 375 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 MICU1Q9BPX6 476 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 COPS4Q9BT78 406 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 RTL8AQ9BWD3 113 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 RABEP2Q9H5N1 569 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 OPA3Q9H6K4 179 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 DCLRE1BQ9H816 532 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 TMBIM4Q9HC24 238 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 CENPMQ9NSP4 180 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 LYVE1Q9Y5Y7 322 aa6.64□□□□□ -1.35
HMGB1P39-201ENST00000366304 IGHV2-26A0A0B4J1V2 119 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 TMEM210A6NLX4 147 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 SLC22A2O15244 555 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 TK1P04183 234 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ZNF728P0DKX0 622 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 KDELR2P33947 212 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 CX3CR1P49238 355 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ACTA2P62736 377 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ACTG2P63267 376 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ACTC1P68032 377 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ACTA1P68133 377 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 TIGD6Q17RP2 521 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 GFOD2Q3B7J2 385 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 MINOS1Q5TGZ0 78 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ASPHD1Q5U4P2 390 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 KCTD8Q6ZWB6 473 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 FAM57BQ71RH2 274 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 CALHM1Q8IU99 346 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 OR5M8Q8NGP6 311 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 NDNFQ8TB73 568 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 AQP3Q92482 292 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 SLAMF6Q96DU3 332 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 HRASLS5Q96KN8 279 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 AMELYQ99218 206 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 FUZQ9BT04 418 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 NSRP1Q9H0G5 558 aaKnown RBP6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 VCX3BQ9H321 246 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ZMAT4Q9H898 229 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 VCX3AQ9NNX9 186 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 ZFP57Q9NU63 452 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 COMMD3-BMI1R4GMX3 469 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 MINOS1-NBL1R4GNA1 71 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 KMT2AQ03164 3969 aa6.63□□□□□ -1.35
HMGB1P39-201ENST00000366304 TRBV4-1A0A0J9YWV2 114 aa6.62□□□□□ -1.35
HMGB1P39-201ENST00000366304 DHRS12A0PJE2 317 aa6.62□□□□□ -1.35
HMGB1P39-201ENST00000366304 UNC119BA6NIH7 251 aa6.62□□□□□ -1.35
HMGB1P39-201ENST00000366304 CST4P01036 141 aa6.62□□□□□ -1.35
HMGB1P39-201ENST00000366304 ANXA2P07355 339 aaKnown RBP6.62□□□□□ -1.35
HMGB1P39-201ENST00000366304 SLC6A1P30531 599 aa6.62□□□□□ -1.35
HMGB1P39-201ENST00000366304 RANBP1P43487 201 aa6.62□□□□□ -1.35
HMGB1P39-201ENST00000366304 ZNF121P58317 390 aaPredicted RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms