RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 ECH1Q13011 328 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 OR1L3Q8NH93 324 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 SLC25A28Q96A46 364 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 HDHD3Q9BSH5 251 aaPredicted RBP12.33□□□□□ -0.44
COL6A1-201ENST00000361866 PATZ1Q9HBE1 687 aaKnown RBP12.33□□□□□ -0.44
COL6A1-201ENST00000361866 PRR32B1ATL7 298 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 SNRNP200O75643 2136 aaKnown RBP12.33□□□□□ -0.44
COL6A1-201ENST00000361866 IL2RGP31785 369 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 LIMK1P53667 647 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 TGIF1Q15583 401 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 OR2I1PQ8NGU4 316 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 OXGR1Q96P68 337 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 MENTQ9BUN1 341 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 SEC11CQ9BY50 192 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 ENY2Q9NPA8 101 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 IGKV1D-42A0A075B6H8 117 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 EIF1BO60739 113 aaKnown RBP12.33□□□□□ -0.44
COL6A1-201ENST00000361866 AADACP22760 399 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 HOXA1P49639 335 aaPredicted RBP12.33□□□□□ -0.44
COL6A1-201ENST00000361866 RPS16P62249 146 aaKnown RBP12.33□□□□□ -0.44
COL6A1-201ENST00000361866 DEGS2Q6QHC5 323 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 MCHR2Q969V1 340 aa12.33□□□□□ -0.44
COL6A1-201ENST00000361866 MEX3AA1L020 520 aaKnown RBP12.32□□□□□ -0.44
COL6A1-201ENST00000361866 FABP4P15090 132 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 PNLIPRP3Q17RR3 467 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 TMEM164Q5U3C3 297 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 NOXO1Q8NFA2 376 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 ZNF318Q5VUA4 2279 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 EP300Q09472 2414 aaPredicted RBP12.32□□□□□ -0.44
COL6A1-201ENST00000361866 FIGNL2A6NMB9 653 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 SRPXP78539 464 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 SKA3Q8IX90 412 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 C1orf87Q8N0U7 546 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 FAM234AQ9H0X4 552 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 ZNF587BE7ETH6 402 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 ZBTB25P24278 435 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 MPGP29372 298 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 POLR2GP62487 172 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL6A1-201ENST00000361866 SLC36A1Q7Z2H8 476 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 ZSCAN4Q8NAM6 433 aaPredicted RBP12.32□□□□□ -0.44
COL6A1-201ENST00000361866 RPS4Y2Q8TD47 263 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 SLX1AQ9BQ83 275 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 WSB1Q9Y6I7 421 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 POLEQ07864 2286 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 A8MXK9 166 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 BGLAPP02818 100 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 RPS4Y1P22090 263 aaKnown RBP12.32□□□□□ -0.44
COL6A1-201ENST00000361866 PCBD1P61457 104 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 FHL5Q5TD97 284 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 C1orf53Q5VUE5 145 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 VASH2Q86V25 355 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 RPS19BP1Q86WX3 136 aaKnown RBP12.32□□□□□ -0.44
COL6A1-201ENST00000361866 OR8U1Q8NH10 309 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 SLC25A43Q8WUT9 341 aaPredicted RBP12.32□□□□□ -0.44
COL6A1-201ENST00000361866 ZNF426Q9BUY5 554 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 SLC35B3Q9H1N7 401 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 B4GALT7Q9UBV7 327 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 PPP1R3CQ9UQK1 317 aa12.32□□□□□ -0.44
COL6A1-201ENST00000361866 ZNF816-ZNF321PA0A0X1KG74 233 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 PNLIPP16233 465 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 TCN2P20062 427 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 SSR4P51571 173 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 HBG1P69891 147 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 HBG2P69892 147 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 BAXQ07812 192 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 ZNF345Q14585 488 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 OR5C1Q8NGR4 320 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 DYRK2Q92630 601 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 RAB39BQ96DA2 213 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 MVB12AQ96EY5 273 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 MRGPRX4Q96LA9 322 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 SAMD10Q9BYL1 202 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 CASP8AP2Q9UKL3 1982 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 PTPRDP23468 1912 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 A0A1W2PPQ1 181 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 CXCL13O43927 109 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 TTRP02766 147 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 RPS2P15880 293 aaKnown RBP12.31□□□□□ -0.44
COL6A1-201ENST00000361866 APLNRP35414 380 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 FOLR3P41439 243 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 TFAP2EQ6VUC0 442 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 OR5AS1Q8N127 324 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 LHX4Q969G2 390 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 SAT2Q96F10 170 aaPredicted RBP12.31□□□□□ -0.44
COL6A1-201ENST00000361866 SARGQ9BW04 601 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 ESRP2Q9H6T0 727 aaKnown RBP12.31□□□□□ -0.44
COL6A1-201ENST00000361866 STRAPQ9Y3F4 350 aaKnown RBP12.31□□□□□ -0.44
COL6A1-201ENST00000361866 MPDZO75970 2070 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 A0A1W2PQF6 199 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 H7BYZ3 331 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 ZNF528Q3MIS6 628 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 ABHD17BQ5VST6 288 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 ZNF429Q86V71 674 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 NMES1Q9C002 83 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 NOSIPQ9Y314 301 aaKnown RBP12.31□□□□□ -0.44
COL6A1-201ENST00000361866 DNAH12Q6ZR08 3092 aa12.31□□□□□ -0.44
COL6A1-201ENST00000361866 ANKUB1A6NFN9 424 aa12.3□□□□□ -0.44
COL6A1-201ENST00000361866 PPP5D1E7EU14 171 aa12.3□□□□□ -0.44
COL6A1-201ENST00000361866 G0S2P27469 103 aa12.3□□□□□ -0.44
COL6A1-201ENST00000361866 UBE2NP61088 152 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms