RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 TBL2Q9Y4P3 447 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 DUSP11O75319 330 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 NMBP08949 121 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 MC5RP33032 325 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR3A1P47881 315 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 MRPS6P82932 125 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 FABP9Q0Z7S8 132 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 EBPQ15125 230 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR13H1Q8NG92 308 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR5K2Q8NHB8 316 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR14L1PQ8NHC6 308 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 DNASE2BQ8WZ79 361 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 NPAS1Q99742 590 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 WDR83Q9BRX9 315 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 CDKN1BP46527 198 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ORAOV1Q8WV07 137 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 PARP11Q9NR21 331 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 CEACAM18A8MTB9 384 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ONECUT2O95948 504 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 NXPE1Q8N323 547 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ATP5SQ99766 215 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR51B4Q9Y5P0 310 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 M0R082 166 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 SBK3P0C264 359 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 RGRP47804 291 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF157P51786 506 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 PMVKQ15126 192 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 EMC6Q9BV81 110 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM106CQ9BVX2 250 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 SIRPB1O00241 398 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 FAM3BP58499 235 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 SIRPAP78324 504 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF770Q6IQ21 691 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 NRMQ8IXM6 262 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 PRRX2Q99811 253 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 TSPAN10Q9H1Z9 355 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 PIGVQ9NUD9 493 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 DNASE2O00115 360 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 TAPBPO15533 448 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 SNAI1O95863 264 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 HTR1AP08908 422 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR6C3Q9NZP0 311 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF256Q9Y2P7 627 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 A0A1W2PS29 197 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR4C45A6NMZ5 311 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 F8VVB4 439 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 F8VWA3 439 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 TGFBR3LH3BV60 316 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 CTSLP07711 333 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 SMIM10L2AP0DMW4 78 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 SMIM10L2BP0DMW5 78 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 PRSS35Q8N3Z0 413 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 CASD1Q96PB1 797 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF214Q9UL59 606 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 NEU3Q9UQ49 428 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 MRPS2Q9Y399 296 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 A0A0G2JK05 382 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 CLEC18AA5D8T8 446 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 GNRH1P01148 92 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 C1SP09871 688 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF17P17021 662 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 DDTP30046 118 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 DUSP3P51452 185 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 TSPAN31Q12999 210 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 RUNX2Q13950 521 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 CLEC18CQ8NCF0 446 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 GCM1Q9NP62 436 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 ALDOCP09972 364 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 SLC6A9P48067 706 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 C12orf54Q6X4T0 127 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 PIANPQ8IYJ0 282 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 HDAC8Q9BY41 377 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 DHDHQ9UQ10 334 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 CLDN16Q9Y5I7 305 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 F2RP25116 425 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 TMPRSS3P57727 454 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 MRM1Q6IN84 353 aaKnown RBP3.18□□□□□ -1.9
SYNE1-201ENST00000341594 OR6T1Q8NGN1 323 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 PPIL1Q9Y3C6 166 aa3.18□□□□□ -1.9
SYNE1-201ENST00000341594 GAGE10A6NGK3 116 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 C12orf73Q69YU5 71 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR2A2Q6IF42 318 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 VITQ6UXI7 678 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 AHRRA9YTQ3 701 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 REG1AP05451 166 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 HLXQ14774 488 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 KHDC3LQ587J8 217 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 C9orf57Q5W0N0 161 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 C10orf126Q8N4M7 172 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF676Q8N7Q3 588 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SDR9C7Q8NEX9 313 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR5D13Q8NGL4 314 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF582Q96NG8 517 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RBP7Q96R05 134 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 AUNIPQ9H7T9 357 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 DHCR7Q9UBM7 475 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PRODH2Q9UF12 536 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 C22orf46C9J442 243 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 BCAT2O15382 392 aaPredicted RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms