RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SSU72Q9NP77 194 aaKnown RBP7.33□□□□□ -1.24
HMGB1-203ENST00000341423 A0A1W2PPK0 400 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 TMEM212A6NML5 194 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 SLC22A1O15245 554 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 TAPBPO15533 448 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 TSC22D2O75157 780 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CLDN1O95832 211 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 PATE4P0C8F1 98 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 EPHA2P29317 976 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 GABARAPL2P60520 117 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CYHR1Q6ZMK1 362 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 INO80EQ8NBZ0 244 aaPredicted RBP7.33□□□□□ -1.24
HMGB1-203ENST00000341423 ZBTB34Q8NCN2 500 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 ITPKCQ96DU7 683 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CXorf36Q9H7Y0 433 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 DCLRE1BQ9H816 532 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 IGHV3OR15-7A0A075B7D8 119 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 OR2A4O95047 310 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 ACAA1P09110 424 aaPredicted RBP7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CST2P09228 141 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CPN1P15169 458 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 AGTR1P30556 359 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 TAS2R46P59540 309 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 KANK2Q63ZY3 851 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CORO6Q6QEF8 472 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF517Q6ZMY9 492 aaPredicted RBP7.33□□□□□ -1.24
HMGB1-203ENST00000341423 LHFPL3Q86UP9 236 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 ADGRG5Q8IZF4 528 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 LRRC57Q8N9N7 239 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 MS4A10Q96PG2 267 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 OR2A7Q96R45 310 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 UCN2Q96RP3 112 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 FOXJ3Q9UPW0 622 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 TDRD6O60522 2096 aaKnown RBP7.33□□□□□ -1.24
HMGB1-203ENST00000341423 IMPA2O14732 288 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CAV2P51636 162 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 FGGYQ96C11 551 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 MARS2Q96GW9 593 aaKnown RBP7.33□□□□□ -1.24
HMGB1-203ENST00000341423 VSTM2LQ96N03 204 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 GPR84Q9NQS5 396 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 WNK2Q9Y3S1 2297 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CCNKO75909 580 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SEC11BP0C7V7 166 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 AZGP1P25311 298 aaKnown RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 KIR3DL2P43630 455 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 TNFAIP8L3Q5GJ75 292 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SNX29P2Q8IUI4 249 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 MARCH1Q8TCQ1 289 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 FCGR1BQ92637 280 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SLC25A33Q9BSK2 321 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 YIPF3Q9GZM5 350 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 ACOXLQ9NUZ1 547 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 WIPI2Q9Y4P8 454 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 MYH6P13533 1939 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 TRAV9-2A0A087WT02 112 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 OOEPA6NGQ2 149 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SEC14L6B5MCN3 397 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 RPA2P15927 270 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 CDAP32320 146 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 ELF3P78545 371 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 CDK5Q00535 292 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 ATXN7L3Q14CW9 347 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 THAP6Q8TBB0 222 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 OR51E1Q8TCB6 317 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 RCC1LQ96I51 464 aaKnown RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 RREB1Q92766 1687 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 PIN1P1O15428 100 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 DUS4LO95620 317 aaKnown RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 TFAP2AP05549 437 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SPATS1Q496A3 300 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 PEAR1Q5VY43 1037 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 MRPL14Q6P1L8 145 aaKnown RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 IL34Q6ZMJ4 242 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 MBOAT2Q6ZWT7 520 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 CDH26Q8IXH8 852 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 LILRB1Q8NHL6 650 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 METTL26Q96S19 204 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 NRN1Q9NPD7 142 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 AQP12BA6NM10 295 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 C17orf112F2Z3M2 114 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 OR10J4P0C629 311 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SLC2A2P11168 524 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-203ENST00000341423 BSGP35613 385 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 KIR2DS2P43631 304 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SLC18A1P54219 525 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SELENOWP63302 87 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 AKIRIN2Q53H80 203 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 AQP12AQ8IXF9 295 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SLC7A13Q8TCU3 470 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 MCHR2Q969V1 340 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 RNF183Q96D59 192 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 AASSQ9UDR5 926 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 MYH7BA7E2Y1 1941 aa7.32□□□□□ -1.24
HMGB1-203ENST00000341423 SNURFLB1AK76 121 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 SPP1P10451 314 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 MAKP20794 623 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ZBTB25P24278 435 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 TRIM25Q14258 630 aaKnown RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ZIC1Q15915 447 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 DESI1Q6ICB0 168 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms