RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DUX4L6P0CJ89 424 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUX4L7P0CJ90 424 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 MUC1P15941 1255 aaPredicted RBP13.15□□□□□ -0.3
CLN3-201ENST00000333496 AMY2BP19961 511 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 NANOS3P60323 173 aaKnown RBP13.15□□□□□ -0.3
CLN3-201ENST00000333496 SLC35A2P78381 396 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 RAB40BQ12829 278 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 GALEQ14376 348 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 CLVS2Q5SYC1 327 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 FDX2Q6P4F2 183 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUX4L9Q6RFH8 374 aaPredicted RBP13.15□□□□□ -0.3
CLN3-201ENST00000333496 LINC00299Q6ZSB3 139 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 SVOPQ8N4V2 548 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 OR52I1Q8NGK6 324 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 OR2G2Q8NGZ5 317 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 RAB40AQ8WXH6 277 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 SGCDQ92629 289 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 PELI1Q96FA3 418 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 C4orf36Q96KX1 117 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 NAA50Q9GZZ1 169 aaKnown RBP13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUSP21Q9H596 190 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 FRRS1LQ9P0K9 344 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 KAAG1Q9UBP8 84 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUX4Q9UBX2 424 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 AUP1Q9Y679 476 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 A0A1B0GVI7 797 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 OR5B21A6NL26 309 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 C22orf46C9J442 243 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 J3QLW9 94 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 SYT7O43581 403 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 ZNF19P17023 458 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 NPY4RP50391 375 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 GMFBP60983 142 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 MICBQ29980 383 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 ANKRD13BQ86YJ7 626 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 FGFRL1Q8N441 504 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 OR5T2Q8NGG2 359 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 NANPQ8TBE9 248 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 AQP3Q92482 292 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 ALG8Q9BVK2 526 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 ISG20L2Q9H9L3 353 aaKnown RBP13.14□□□□□ -0.31
CLN3-201ENST00000333496 ERVK-18Q9QC07 812 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 PSORS1C1Q9UIG5 152 aa13.14□□□□□ -0.31
CLN3-201ENST00000333496 RPL36Q9Y3U8 105 aaKnown RBP13.14□□□□□ -0.31
CLN3-201ENST00000333496 KIR2DS1A0A191URI9 304 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 LOC107986453A0A1B0GWG9 222 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 TMPRSS2O15393 492 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 EPHA1P21709 976 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 KLF17Q5JT82 389 aaPredicted RBP13.13□□□□□ -0.31
CLN3-201ENST00000333496 STUMQ69YW2 141 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 TECTBQ96PL2 329 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 CCL13Q99616 98 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 SNTG1Q9NSN8 517 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 ERVK13-1Q9NX77 482 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 PQLC2LA1A4F0 135 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 DVL1O14640 695 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 PFDN1O60925 122 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 FADS2O95864 444 aaKnown RBP13.13□□□□□ -0.31
CLN3-201ENST00000333496 TFF1P04155 84 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 UBCP0CG48 685 aaKnown RBP13.13□□□□□ -0.31
CLN3-201ENST00000333496 ACTA2P62736 377 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 ACTG2P63267 376 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 UBE2V2Q15819 145 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 HAGHLQ6PII5 290 aaPredicted RBP13.13□□□□□ -0.31
CLN3-201ENST00000333496 TEX29Q8N6K0 151 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 NUDT16L1Q9BRJ7 211 aaKnown RBP13.13□□□□□ -0.31
CLN3-201ENST00000333496 FUNDC2Q9BWH2 189 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 FKBP14Q9NWM8 211 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 COL6A5A8TX70 2615 aa13.13□□□□□ -0.31
CLN3-201ENST00000333496 DNHD1Q96M86 4753 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 ANKRD61A6NGH8 418 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 SLC22A1O15245 554 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 RGS10O43665 173 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 CLPXO76031 633 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 GABARAPO95166 117 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 ISG15P05161 165 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 GLRA1P23415 457 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 HAAOP46952 286 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 TGM4P49221 684 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 CCR9P51686 369 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 KLHL22Q53GT1 634 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 ATPAF1Q5TC12 328 aaPredicted RBP13.12□□□□□ -0.31
CLN3-201ENST00000333496 AHSA2Q719I0 299 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 SYS1Q8N2H4 156 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 FAM216BQ8N7L0 139 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 ANGPTL6Q8NI99 470 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 GGHQ92820 318 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 MRI1Q9BV20 369 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 CCDC90BQ9GZT6 254 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 PLEKHA1Q9HB21 404 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 FGF20Q9NP95 211 aaPredicted RBP13.12□□□□□ -0.31
CLN3-201ENST00000333496 INPP5EQ9NRR6 644 aa13.12□□□□□ -0.31
CLN3-201ENST00000333496 OR4C45A6NMZ5 311 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 SYNGR1O43759 233 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 LIMS3P0CW19 117 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 LIMS4P0CW20 117 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 SELLP14151 372 aa13.11□□□□□ -0.31
CLN3-201ENST00000333496 ZNF182P17025 639 aaPredicted RBP13.11□□□□□ -0.31
CLN3-201ENST00000333496 GP2P55259 537 aaKnown RBP13.11□□□□□ -0.31
CLN3-201ENST00000333496 ALKBH1Q13686 389 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms