RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ALOX5APP20292 161 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 LPAR6P43657 344 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 TNFSF10P50591 281 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 DUSP5Q16690 384 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 GAGE2AQ6NT46 116 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 ANKRD37Q7Z713 158 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 CALHM3Q86XJ0 350 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 DEFB108BQ8NET1 73 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 NT5CQ8TCD5 201 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 ISL2Q96A47 359 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 MRGPRX2Q96LB1 330 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 LTB4R2Q9NPC1 389 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 LOC390937A0A1W2PQ73 354 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 NPFFO15130 113 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 FZD6O60353 706 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 PAPLNO95428 1278 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 LGALS1P09382 135 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 GKN2Q86XP6 184 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 CBLN2Q8IUK8 224 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 TOX2Q96NM4 488 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 CXorf36Q9H7Y0 433 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 C20orf141Q9NUB4 165 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 SETD1BQ9UPS6 1966 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 KLF11O14901 512 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 NFATC1O95644 943 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 LIPFP07098 398 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ACRP10323 421 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 CA6P23280 308 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 CNTFRP26992 372 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 FLT3LGP49771 235 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 UBE2E1P51965 193 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 NPC2P61916 151 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 EMX2Q04743 252 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ECM1Q16610 540 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ANKRD55Q3KP44 614 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 LRRC10Q5BKY1 277 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PIP5KL1Q5T9C9 394 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PRELID2Q8N945 189 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 NTNG1Q9Y2I2 539 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 GPR37L1O60883 481 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 S1PR4O95977 384 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 CPMP14384 443 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 GCAP28676 217 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 IL13RA2Q14627 380 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 TBR1Q16650 682 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 YOD1Q5VVQ6 348 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ADGRA1Q86SQ6 560 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 GLIS3Q8NEA6 775 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 OR10G8Q8NGN5 311 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 FAM3DQ96BQ1 224 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 EAF1Q96JC9 268 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 POM121L2Q96KW2 1035 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 DUX5Q96PT3 197 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 TAAR6Q96RI8 345 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 SLC17A5Q9NRA2 495 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 CRB1P82279 1406 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 TOMM40O96008 361 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PRDX2P32119 198 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 DUX4L9Q6RFH8 374 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 HSD11B1LQ7Z5J1 315 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 TTC9CQ8N5M4 171 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 MAGIXQ9H6Y5 334 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 DTLQ9NZJ0 730 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 RABAC1Q9UI14 185 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 OVOS2A0A0G2JMS6 1433 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 OVOS2A0A0J9YW53 1432 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 OVOS2Q6IE36 1432 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 TCRBV7S2A1N4TA0A589 114 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 IGSF23A1L1A6 192 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 OR51F1A6NGY5 319 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 SULT2B1O00204 365 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 IGHEP01854 428 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 CD3DP04234 171 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 FUT1P19526 365 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PSMB6P28072 239 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 RXRBP28702 533 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 KIR3DL2P43630 455 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 HLA-DRB3P79483 266 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ABHD18Q0P651 414 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 FAAP20Q6NZ36 180 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 Q6ZSR9 355 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 WDFY1Q8IWB7 410 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 OR6X1Q8NH79 312 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ACER1Q8TDN7 264 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 FAM84AQ96KN4 292 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF385AQ96PM9 386 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 SLC30A3Q99726 388 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PRRX2Q99811 253 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ASPDHA6ND91 283 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 NAPSAO96009 420 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PRNPP04156 253 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 TAS2R38P59533 333 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 DCDP81605 110 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 LAMTOR4Q0VGL1 99 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 GSG1Q2KHT4 349 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF322Q6U7Q0 402 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 CLEC2AQ6UVW9 174 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PRNTQ86SH4 94 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PDPNQ86YL7 162 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 FAM219AQ8IW50 185 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms