RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TNFRSF1AP19438 455 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 SLC25A1P53007 311 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 C1orf210Q8IVY1 113 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 SPSB1Q96BD6 273 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 POM121L2Q96KW2 1035 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 C11orf87Q6NUJ2 197 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 GLDNQ6ZMI3 551 aaPredicted RBP10.22□□□□□ -0.77
USP53-201ENST00000274030 GVQW1Q8N7I0 195 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 OR5V1Q9UGF6 321 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 SSC5DA1L4H1 1573 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 SMCHD1A6NHR9 2005 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 PPIHO43447 177 aaKnown RBP10.21□□□□□ -0.77
USP53-201ENST00000274030 MBTPS2O43462 519 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 ADAM20O43506 726 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 DHRS3O75911 302 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 CPN1P15169 458 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 COX7A1P24310 79 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 SIGLECL1Q8N7X8 197 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 OR8D4Q8NGM9 314 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 MISP3Q96FF7 219 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 OCIAD1Q9NX40 245 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 CABIN1Q9Y6J0 2220 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 ECM29Q5VYK3 1845 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 CD160O95971 181 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 HIST1H1DP16402 221 aaKnown RBP10.21□□□□□ -0.77
USP53-201ENST00000274030 EPHA8P29322 1005 aaPredicted RBP10.21□□□□□ -0.77
USP53-201ENST00000274030 NXPH1P58417 271 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 H3F3AP84243 136 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 FUT7Q11130 342 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 PPP1R1AQ13522 171 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 Q3ZCU0 254 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 ARRDC1Q8N5I2 433 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 RHOFQ9HBH0 211 aa10.21□□□□□ -0.77
USP53-201ENST00000274030 PCM1Q15154 2024 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 ZNF785A8K8V0 405 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 PLPP2O43688 288 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 CCL4P13236 92 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 ST3GAL2Q16842 350 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 MYO5AQ9Y4I1 1855 aaKnown RBP10.21□□□□□ -0.78
USP53-201ENST00000274030 SERTM1A2A2V5 107 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 HRKO00198 91 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 TO15178 435 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 ZNF205O95201 554 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 SCN1AP35498 2009 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 ERVFC1-1P60608 527 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 HTRA4P83105 476 aaPredicted RBP10.21□□□□□ -0.78
USP53-201ENST00000274030 HES3Q5TGS1 186 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 SLC36A1Q7Z2H8 476 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 ZNF485Q8NCK3 441 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 LURAP1Q96LR2 239 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 SIRT3Q9NTG7 399 aaPredicted RBP10.21□□□□□ -0.78
USP53-201ENST00000274030 TAAR3PQ9P1P4 343 aa10.21□□□□□ -0.78
USP53-201ENST00000274030 ZNF574Q6ZN55 896 aaPredicted RBP10.2□□□□□ -0.78
USP53-201ENST00000274030 OR10AC1Q8NH08 325 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 HMGCLL1Q8TB92 370 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 CNTD2Q9H8S5 307 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 ZDHHC11Q9H8X9 412 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 SVILO95425 2214 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 K7EQS6 105 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 PLPP3O14495 311 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 MUC20Q8N307 709 aaPredicted RBP10.2□□□□□ -0.78
USP53-201ENST00000274030 CA5BP1Q8WTZ4 195 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 TNFRSF19Q9NS68 423 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 OR5H1A6NKK0 313 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 OPRK1P41145 380 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 TRIP6Q15654 476 aaKnown RBP10.2□□□□□ -0.78
USP53-201ENST00000274030 CD226Q15762 336 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 PRRX2Q99811 253 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 TNRC6CQ9HCJ0 1690 aaKnown RBP10.2□□□□□ -0.78
USP53-201ENST00000274030 TCAPO15273 167 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 CTAG2O75638 210 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 LPAR6P43657 344 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 GAMTQ14353 236 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 SSPNQ14714 243 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 RNPS1Q15287 305 aaKnown RBP10.2□□□□□ -0.78
USP53-201ENST00000274030 MIDNQ504T8 468 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 ABI3BPQ7Z7G0 1075 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 MRGPRDQ8TDS7 321 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 LRRC29Q8WV35 223 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 C10orf90Q96M02 699 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 C12orf10Q9HB07 376 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 PRR13Q9NZ81 148 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 ZMIZ1Q9ULJ6 1067 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 FAM157AC9JC47 383 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 NDUFB6O95139 128 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 EML2O95834 649 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 KRTDAPP60985 99 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 DHRS2Q13268 280 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 RNF151Q2KHN1 245 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 Q56UQ5 140 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 CLEC5AQ9NY25 188 aa10.2□□□□□ -0.78
USP53-201ENST00000274030 AANATQ16613 207 aa10.19□□□□□ -0.78
USP53-201ENST00000274030 NHLRC1Q6VVB1 395 aa10.19□□□□□ -0.78
USP53-201ENST00000274030 COX14Q96I36 57 aa10.19□□□□□ -0.78
USP53-201ENST00000274030 NXF2Q9GZY0 626 aaKnown RBP10.19□□□□□ -0.78
USP53-201ENST00000274030 NUDT19A8MXV4 375 aa10.19□□□□□ -0.78
USP53-201ENST00000274030 FABP4P15090 132 aa10.19□□□□□ -0.78
USP53-201ENST00000274030 FPR2P25090 351 aa10.19□□□□□ -0.78
USP53-201ENST00000274030 S100A4P26447 101 aaKnown RBP10.19□□□□□ -0.78
USP53-201ENST00000274030 FGF9P31371 208 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms