RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ALKBH6Q3KRA9 238 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 ZNF260Q3ZCT1 412 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 RNASE12Q5GAN4 147 aaKnown RBP12.06□□□□□ -0.48
SS18-201ENST00000269137 FAM76BQ5HYJ3 339 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 TMEM255AQ5JRV8 349 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 MTFR2Q6P444 385 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 NRARPQ7Z6K4 114 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 ZNF573Q86YE8 665 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 TOMM5Q8N4H5 51 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 ZNF611Q8N823 705 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 OR8G5Q8NG78 346 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 OR10K1Q8NGX5 313 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 OR51F2Q8NH61 342 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 GPX8Q8TED1 209 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 POM121Q96HA1 1249 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 MICU1Q9BPX6 476 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 NICN1Q9BSH3 213 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 RBFOX1Q9NWB1 397 aaKnown RBP12.06□□□□□ -0.48
SS18-201ENST00000269137 KLK11Q9UBX7 282 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 MTFP1Q9UDX5 166 aa12.06□□□□□ -0.48
SS18-201ENST00000269137 A0A1B0GWJ7 208 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 FOXI3A8MTJ6 420 aaPredicted RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 AKR7A2O43488 359 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 ECDO95905 644 aaPredicted RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 PLATP00750 562 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 CSTBP04080 98 aaKnown RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 GSTT2BP0CG30 244 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 ZNF250P15622 560 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 CPT2P23786 658 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 HAAOP46952 286 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 CD300CQ08708 224 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 SNTB2Q13425 540 aaKnown RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 RGS7BPQ6MZT1 257 aaPredicted RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 TMEM108Q6UXF1 575 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 SLC25A26Q70HW3 274 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 CHST4Q8NCG5 386 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 OR51T1Q8NGJ9 327 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 RNASE6Q93091 150 aaKnown RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 SEH1LQ96EE3 360 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 ZC3HAV1LQ96H79 300 aaKnown RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 Q96M66 194 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 C7orf50Q9BRJ6 194 aaKnown RBP12.05□□□□□ -0.48
SS18-201ENST00000269137 RTL8AQ9BWD3 113 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 SELENOIQ9C0D9 397 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 TMEM100Q9NV29 134 aa12.05□□□□□ -0.48
SS18-201ENST00000269137 A0A1B0GUH1 482 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 SOCS1O15524 211 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 RBBP9O75884 186 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 HTR3BO95264 441 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 LPLP06858 475 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 GSTP1P09211 210 aaKnown RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 SRP9P49458 86 aaKnown RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 FABP6P51161 128 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 TMEM50BP56557 158 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 AP3S2P59780 193 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 RPS23P62266 143 aaKnown RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 CDNFQ49AH0 187 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 ELP2Q6IA86 826 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 Q6ZTK2 550 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 FJX1Q86VR8 437 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 WFDC8Q8IUA0 241 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 MKXQ8IYA7 352 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 OR8S1Q8NH09 359 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 DEDD2Q8WXF8 326 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 DVL3Q92997 716 aaPredicted RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 RAB3CQ96E17 227 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 PKIBQ9C010 78 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 OR51I2Q9H344 312 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.04□□□□□ -0.48
SS18-201ENST00000269137 ERRFI1Q9UJM3 462 aaPredicted RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 CACNG2Q9Y698 323 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 ANKRD20A5PA0PJZ0 165 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 TIMM8AO60220 97 aaPredicted RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 SSX4O60224 188 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 HIST1H1DP16402 221 aaKnown RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 MPZP25189 248 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 PLAC9Q5JTB6 97 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 GALNT11Q8NCW6 608 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 DUSP18Q8NEJ0 188 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 NUP37Q8NFH4 326 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 CHAC2Q8WUX2 184 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 TMEM171Q8WVE6 324 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 HPS1Q92902 700 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 WFIKKN1Q96NZ8 548 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 ADAT1Q9BUB4 502 aaKnown RBP12.04□□□□□ -0.48
SS18-201ENST00000269137 NGBQ9NPG2 151 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 TAS2R8Q9NYW2 309 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 CFAP46Q8IYW2 2715 aa12.04□□□□□ -0.48
SS18-201ENST00000269137 TMEM235A6NFC5 223 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 CENPXA8MT69 81 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 ATP6V1G2-DDX39BF2Z307 99 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 ATXN7O15265 892 aaPredicted RBP12.03□□□□□ -0.48
SS18-201ENST00000269137 CYB5AP00167 134 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 IGHV3-13P01766 116 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 SFTPBP07988 381 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 GUCA2AQ02747 115 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 ARL6IP1Q15041 203 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 OR8G1Q15617 311 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 PNLIPRP3Q17RR3 467 aa12.03□□□□□ -0.48
SS18-201ENST00000269137 OSR2Q8N2R0 312 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms