RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ST6GALNAC5Q9BVH7 336 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 SYNGR1O43759 233 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 CALCRP30988 508 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 TIMP3P35625 211 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 MRPS10P82664 201 aaKnown RBP14.15□□□□□ -0.14
USP4-201ENST00000265560 DYRK1AQ13627 763 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 SCGB2B2Q4G0G5 96 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 STEAP1BQ6NZ63 245 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 HAGHLQ6PII5 290 aaPredicted RBP14.15□□□□□ -0.14
USP4-201ENST00000265560 VHLLQ6RSH7 139 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 ZDHHC23Q8IYP9 409 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 OR10AD1Q8NGE0 317 aa14.15□□□□□ -0.14
USP4-201ENST00000265560 URM1Q9BTM9 101 aaKnown RBP14.15□□□□□ -0.14
USP4-201ENST00000265560 ANKHD1Q8IWZ3 2542 aaKnown RBP14.15□□□□□ -0.15
USP4-201ENST00000265560 IGHV1-18A0A0C4DH31 117 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 H0YL77 283 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 M0R1B8 84 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 ECDO95905 644 aaPredicted RBP14.14□□□□□ -0.15
USP4-201ENST00000265560 CYB5AP00167 134 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 IGKV3-15P01624 115 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 CBR1P16152 277 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 ANXA7P20073 488 aaKnown RBP14.14□□□□□ -0.15
USP4-201ENST00000265560 GNG2P59768 71 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 PSG7Q13046 419 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 RAB12Q6IQ22 244 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 UNQ6494/PRO21346Q6UXR6 183 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 DNM1P46Q6ZS02 220 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 LHFPL2Q6ZUX7 228 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 FAAP24Q9BTP7 215 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 METTL9Q9H1A3 318 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 HSPB6O14558 160 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 H2AFB2P0C5Z0 115 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 HIST1H1DP16402 221 aaKnown RBP14.14□□□□□ -0.15
USP4-201ENST00000265560 EIF2B2P49770 351 aaKnown RBP14.14□□□□□ -0.15
USP4-201ENST00000265560 AP3S2P59780 193 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 C17orf78Q8N4C9 275 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 FYTTD1Q96QD9 318 aaKnown RBP14.14□□□□□ -0.15
USP4-201ENST00000265560 C20orf85Q9H1P6 137 aa14.14□□□□□ -0.15
USP4-201ENST00000265560 TRGV8A0A0C4DH27 118 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 ANKRD30BLA7E2S9 258 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 ALX3O95076 343 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 ZNF205O95201 554 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 GSTT2BP0CG30 244 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 PSMB1P20618 241 aaKnown RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 BCL3P20749 454 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 CEACAM8P31997 349 aaPredicted RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 UCNP55089 124 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 MRPL49Q13405 166 aaKnown RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 P2RY6Q15077 328 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 SIGIRRQ6IA17 410 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 OR2W3Q7Z3T1 314 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 OR5L1Q8NGL2 311 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 NPAP1Q9NZP6 1156 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 AKAP6Q13023 2319 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 CNOT4O95628 575 aaKnown RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 PMP2P02689 132 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 AMY2AP04746 511 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 RLN1P04808 185 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 RCVRNP35243 200 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 SF3B4Q15427 424 aaKnown RBP eCLIP14.13□□□□□ -0.159e-6■■□□□ 14.4
USP4-201ENST00000265560 HACD4Q5VWC8 232 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 OR56B1Q8NGI3 324 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 KLF14Q8TD94 323 aaPredicted RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 C15orf40Q8WUR7 153 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 CREB3L1Q96BA8 519 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 HIST1H2AAQ96QV6 131 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 RANGRFQ9HD47 186 aaPredicted RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 ST3GAL6Q9Y274 331 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 MED19A0JLT2 244 aaPredicted RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 ZNF736B4DX44 427 aaPredicted RBP14.13□□□□□ -0.15
USP4-201ENST00000265560 RHBDL1O75783 438 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 RAB3DO95716 219 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 C11orf91Q3C1V1 193 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 CDH26Q8IXH8 852 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 GIMAP1Q8WWP7 306 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 ACTR6Q9GZN1 396 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 MSL2Q9HCI7 577 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 IFT46Q9NQC8 304 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 PLEKHJ1Q9NW61 149 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 ING3Q9NXR8 418 aa14.13□□□□□ -0.15
USP4-201ENST00000265560 CHD3Q12873 2000 aaKnown RBP14.12□□□□□ -0.15
USP4-201ENST00000265560 A8MXE2 369 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 HPXP02790 462 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 UBBP0CG47 229 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 AKAIN1P0CW23 69 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 RAD52P43351 418 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 CEACAM21Q3KPI0 293 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 CCDC54Q8NEL0 328 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 SEC22CQ9BRL7 303 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 GINS4Q9BRT9 223 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 CHST6Q9GZX3 395 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 SLC25A15Q9Y619 301 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 SMLR1H3BR10 107 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 PYCARD-AS1I3L0S3 204 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 HRH1P35367 487 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 C17orf107Q6ZR85 190 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 C5orf24Q7Z6I8 188 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 DPPA2Q7Z7J5 298 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 SLC6A7Q99884 636 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 ZNF701Q9NV72 531 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms