RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ZNF384Q8TF68 577 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 EXTL1Q92935 676 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FAM234AQ9H0X4 552 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 TCF20Q9UGU0 1960 aaKnown RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 PIGFQ07326 219 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ZNF648Q5T619 568 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 SLC39A5Q6ZMH5 540 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 APCDD1Q8J025 514 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 OR2T10Q8NGZ9 312 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 RSG1Q9BU20 258 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 C20orf27Q9GZN8 174 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 RAB1BQ9H0U4 201 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 EMCNQ9ULC0 261 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MPC1Q9Y5U8 109 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MRPL42Q9Y6G3 142 aaKnown RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 CSPG4Q6UVK1 2322 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ZNF320A2RRD8 509 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MAP1LC3B2A6NCE7 125 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 TCAPO15273 167 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 HLA-DQA1P01909 254 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 SNRPBP14678 240 aaKnown RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 NME2P22392 152 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 EPHA8P29322 1005 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 LGALS7P47929 136 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 LIM2P55344 173 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 COL5A1-AS1Q5SY13 56 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MRGPRGQ86SM5 289 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 C17orf47Q8NEP4 570 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ZNF845Q96IR2 970 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 DOK1Q99704 481 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MAP1LC3BQ9GZQ8 125 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 CES1P1Q9UKY3 287 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FNDC1Q4ZHG4 1894 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 A0A1B0GV72 72 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FCN1O00602 326 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 S1PR2O95136 353 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 SOD3P08294 240 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FABP2P12104 132 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 METAP1P53582 386 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 LSM6P62312 80 aaKnown RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ANKRD55Q3KP44 614 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ZNF66Q6ZN08 573 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MAGT1Q9H0U3 335 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 NAT8BQ9UHF3 227 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FAM72CH0Y354 149 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 BCL3P20749 454 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FAM72AQ5TYM5 149 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FAM72DQ6L9T8 149 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FAM72BQ86X60 149 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 PLPP7Q8NBV4 271 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 GPBAR1Q8TDU6 330 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 TMEM40Q8WWA1 233 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 PARD6AQ9NPB6 346 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ZNF716A6NP11 495 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 LIPFP07098 398 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 P2RY1P47900 373 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 CSNK1EP49674 416 aaKnown RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 STAC2Q6ZMT1 411 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MEX3DQ86XN8 651 aaKnown RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 PRSS3P2Q8NHM4 247 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ATOH1Q92858 354 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-201ENST00000011700 MARVELD3Q96A59 401 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 RAB37Q96AX2 223 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 ABHD1Q96SE0 405 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 SLC7A10Q9NS82 523 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 FGF21Q9NSA1 209 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 SIRT5Q9NXA8 310 aa5.48□□□□□ -1.53
VPS13D-201ENST00000011700 C2orf16Q68DN1 1984 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 WDR1O75083 606 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 F13BP05160 661 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 KIR2DL1P43626 348 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-201ENST00000011700 KIR2DL2P43627 348 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-201ENST00000011700 CAPZBP47756 277 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 HFEQ30201 348 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 H1FOOQ8IZA3 346 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-201ENST00000011700 GPR32P1Q8NGA4 272 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 OR2G2Q8NGZ5 317 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 FAM210BQ96KR6 192 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 SDF2Q99470 211 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 AMBRA1Q9C0C7 1298 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 AMDHD2Q9Y303 409 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 WASHC3Q9Y3C0 194 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 CHST2Q9Y4C5 530 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 H3BSH0 61 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 OR5G3P0C626 314 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 SLC25A6P12236 298 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 CYBAP13498 195 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 SPANXN5Q5MJ07 72 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 C1QTNF12Q5T7M4 302 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 ALKAL1Q6UXT8 129 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 PRSS42Q7Z5A4 293 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 OR4D10Q8NGI6 311 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 TGIF2Q9GZN2 237 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 NPTNQ9Y639 398 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 DSPPQ9NZW4 1301 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-201ENST00000011700 A0A1W2PPC4 97 aa5.47□□□□□ -1.53
VPS13D-201ENST00000011700 RPL34P49207 117 aaKnown RBP5.47□□□□□ -1.53
VPS13D-201ENST00000011700 SNRPEP62304 92 aaKnown RBP5.47□□□□□ -1.53
VPS13D-201ENST00000011700 PHLDA2Q53GA4 152 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms