RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RIIAD1A6NNX1 92 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 IFNGP01579 166 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 COX7A1P24310 79 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 GSTT1P30711 240 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 LGALS4P56470 323 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 PPP1R8Q12972 351 aaKnown RBP15.72■□□□□ 0.11
CLN3-262ENST00000637699 PLA1AQ53H76 456 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 ZNF770Q6IQ21 691 aaPredicted RBP15.72■□□□□ 0.11
CLN3-262ENST00000637699 LIAT1Q6ZQX7 453 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.72■□□□□ 0.11
CLN3-262ENST00000637699 AQP11Q8NBQ7 271 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 CCDC197Q8NCU1 140 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 PAPD5Q8NDF8 572 aaKnown RBP15.72■□□□□ 0.11
CLN3-262ENST00000637699 HEXA-AS1Q9H8Q6 139 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 ZNF222Q9UK12 451 aa15.72■□□□□ 0.11
CLN3-262ENST00000637699 ZNF732B4DXR9 585 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 CCNB2O95067 398 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 RAB13P51153 203 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 ERVFRD-1P60508 538 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 DMRTC1Q5HYR2 192 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 SHFQ7M4L6 423 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 NDUFA11Q86Y39 141 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 OR4F17Q8NGA8 305 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 OR4F4Q96R69 305 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 OR5M11Q96RB7 305 aa15.71■□□□□ 0.11
CLN3-262ENST00000637699 CITED2Q99967 270 aaPredicted RBP15.71■□□□□ 0.11
CLN3-262ENST00000637699 TCRBV5S2A0A599 114 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 GLCEO94923 617 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 ZNF3P17036 446 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 MS4A2Q01362 244 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 CEP78Q5JTW2 689 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 FOXB2Q5VYV0 432 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 TMEM200BQ69YZ2 307 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 LHFPL4Q7Z7J7 247 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 OR5K1Q8NHB7 308 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 THEM6Q8WUY1 208 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 SDSLQ96GA7 329 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 OR51I2Q9H344 312 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 FAM53CQ9NYF3 392 aa15.7■□□□□ 0.1
CLN3-262ENST00000637699 ADARB2-AS1A8MUL3 147 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 CALB2P22676 271 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 RPL31P62899 125 aaKnown RBP15.69■□□□□ 0.1
CLN3-262ENST00000637699 GNG3P63215 75 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 THAP5Q7Z6K1 395 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 ARHGAP24Q8N264 748 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 C11orf42Q8N5U0 333 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 OR4M1Q8NGD0 313 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 OR8B12Q8NGG6 310 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 ZNF671Q8TAW3 534 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 FAM81AQ8TBF8 368 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 OR51V1Q9H2C8 321 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 CMC2Q9NRP2 79 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 TAS2R1Q9NYW7 299 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 RYR3Q15413 4870 aa15.69■□□□□ 0.1
CLN3-262ENST00000637699 A0A1W2PPH5 198 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 RFPL4AA6NLU0 287 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 RFPL4AL1F8VTS6 287 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 PEX14O75381 377 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 MPIG6BO95866 241 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 LYNP07948 512 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 CCL3L1P16619 93 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 MAGEA2P43356 314 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 TRIM25Q14258 630 aaKnown RBP15.68■□□□□ 0.1
CLN3-262ENST00000637699 VAX1Q5SQQ9 334 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 LCN8Q6JVE9 175 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 HAGHLQ6PII5 290 aaPredicted RBP15.68■□□□□ 0.1
CLN3-262ENST00000637699 CCBE1Q6UXH8 406 aaPredicted RBP15.68■□□□□ 0.1
CLN3-262ENST00000637699 ZNF782Q6ZMW2 699 aaPredicted RBP15.68■□□□□ 0.1
CLN3-262ENST00000637699 TMEM219Q86XT9 240 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 DYNAPQ8N1N2 210 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 Q8N2B8 174 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 CD177Q8N6Q3 437 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 AQP3Q92482 292 aa15.68■□□□□ 0.1
CLN3-262ENST00000637699 COL7A1Q02388 2944 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 hCG_1809904A0A1W2PP81 198 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 A0A1W2PPE2 198 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 A0A1W2PR64 198 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 A0A1W2PRV1 198 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 SELENOFO60613 162 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 IGLL1P15814 213 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 CNN3Q15417 329 aaKnown RBP15.67■□□□□ 0.1
CLN3-262ENST00000637699 CEACAM21Q3KPI0 293 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 DHFR2Q86XF0 187 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 IQCF1Q8N6M8 205 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 OR2T27Q8NH04 317 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 OTOSQ8NHW6 89 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 ZNF488Q96MN9 340 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 CDCA4Q9BXL8 241 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLN3-262ENST00000637699 VNN3Q9NY84 501 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 USE1Q9NZ43 259 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 TCF19Q9Y242 345 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 LRP12Q9Y561 859 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 U3KQV3 271 aa15.67■□□□□ 0.1
CLN3-262ENST00000637699 FAM90A8PA6NJQ4 464 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 VGLL3A8MV65 326 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 MTRF1O75570 445 aaKnown RBP15.66■□□□□ 0.1
CLN3-262ENST00000637699 CD33P20138 364 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 PAICSP22234 425 aaKnown RBP15.66■□□□□ 0.1
CLN3-262ENST00000637699 PRDX2P32119 198 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms