RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF732B4DXR9 585 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 SPRY1O43609 319 aaPredicted RBP15.74■□□□□ 0.11
CLN3-254ENST00000637050 CDC14BO60729 498 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 TAS2R20P59543 309 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 RPS23P62266 143 aaKnown RBP15.74■□□□□ 0.11
CLN3-254ENST00000637050 MSMPQ1L6U9 139 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 SLC22A6Q4U2R8 563 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 CDH24Q86UP0 819 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 CALHM1Q8IU99 346 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 NUP37Q8NFH4 326 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 TMEM171Q8WVE6 324 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 PHF21AQ96BD5 680 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 RNF170Q96K19 258 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 CST11Q9H112 138 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 NOP16Q9Y3C1 178 aaKnown RBP15.74■□□□□ 0.11
CLN3-254ENST00000637050 METTL21EPA6NDL7 271 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 GRNP28799 593 aaKnown RBP15.73■□□□□ 0.11
CLN3-254ENST00000637050 GNG3P63215 75 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 BSPH1Q075Z2 132 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 TFF3Q07654 80 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 ZSCAN4Q8NAM6 433 aaPredicted RBP15.73■□□□□ 0.11
CLN3-254ENST00000637050 C15orf40Q8WUR7 153 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 RADILQ96JH8 1075 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 TMEM59Q9BXS4 323 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 METTL9Q9H1A3 318 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 LPAR5Q9H1C0 372 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 NDRG3Q9UGV2 375 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 FZR1Q9UM11 496 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 CACNA1BQ00975 2339 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 IGSF10Q6WRI0 2623 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 KALRNO60229 2985 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 A0A1B0GWJ7 208 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 A0A1W2PP11 408 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 B8ZZF3 427 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 ABCD4O14678 606 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 ANGPTL7O43827 346 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 TIMM8AO60220 97 aaPredicted RBP15.73■□□□□ 0.11
CLN3-254ENST00000637050 CRTAPO75718 401 aaPredicted RBP15.73■□□□□ 0.11
CLN3-254ENST00000637050 MPIG6BO95866 241 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 PLATP00750 562 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 IGHV3-13P01766 116 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 AGAP20933 346 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 RAB12Q6IQ22 244 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 ZNF611Q8N823 705 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 OR10K1Q8NGX5 313 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 ADAT1Q9BUB4 502 aaKnown RBP15.73■□□□□ 0.11
CLN3-254ENST00000637050 RTL8AQ9BWD3 113 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 BANF2Q9H503 90 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 TMEM100Q9NV29 134 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 IL36GQ9NZH8 169 aa15.73■□□□□ 0.11
CLN3-254ENST00000637050 ESPL1Q14674 2120 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 HEATR1Q9H583 2144 aaKnown RBP15.72■□□□□ 0.11
CLN3-254ENST00000637050 IGKV1-12A0A0C4DH73 117 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 A0A1W2PQ09 198 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 RAB27BO00194 218 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 GSTZ1O43708 216 aaPredicted RBP15.72■□□□□ 0.11
CLN3-254ENST00000637050 SCGNO76038 276 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 IGKV1D-12P01611 117 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 SERPINA2P20848 420 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 HAAOP46952 286 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 RPS27AP62979 156 aaKnown RBP15.72■□□□□ 0.11
CLN3-254ENST00000637050 GPR176Q14439 515 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 FAM189A2Q15884 450 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 MOGAT2Q3SYC2 334 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 FAM76BQ5HYJ3 339 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 SAXO1Q8IYX7 474 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 PIAS4Q8N2W9 510 aaPredicted RBP15.72■□□□□ 0.11
CLN3-254ENST00000637050 OR8S1Q8NH09 359 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 GAL3ST1Q99999 423 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 MICU1Q9BPX6 476 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 NUDT16L1Q9BRJ7 211 aaKnown RBP15.72■□□□□ 0.11
CLN3-254ENST00000637050 SLC22A4Q9H015 551 aa15.72■□□□□ 0.11
CLN3-254ENST00000637050 ELL3Q9HB65 397 aaPredicted RBP15.72■□□□□ 0.11
CLN3-254ENST00000637050 IGLV3-9A0A075B6K5 115 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 TRAV18A0A075B6X5 111 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 ZNF780AO75290 641 aaPredicted RBP15.71■□□□□ 0.11
CLN3-254ENST00000637050 MGMTP16455 207 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 MRPS10P82664 201 aaKnown RBP15.71■□□□□ 0.11
CLN3-254ENST00000637050 DGCR2P98153 550 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 SCN1BQ07699 218 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 RSU1Q15404 277 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 NCMAPQ5T1S8 102 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 Q6ZR03 302 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 SLC25A26Q70HW3 274 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 LRP11Q86VZ4 500 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 ZNF573Q86YE8 665 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 ZNF808Q8N4W9 903 aaPredicted RBP15.71■□□□□ 0.11
CLN3-254ENST00000637050 FAM89BQ8N5H3 189 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 ACBD4Q8NC06 268 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 OR51F2Q8NH61 342 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 SMIM4Q8WVI0 70 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 ITLN2Q8WWU7 325 aaPredicted RBP15.71■□□□□ 0.11
CLN3-254ENST00000637050 TRIM63Q969Q1 353 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 THAP7Q9BT49 309 aaPredicted RBP15.71■□□□□ 0.11
CLN3-254ENST00000637050 URM1Q9BTM9 101 aaKnown RBP15.71■□□□□ 0.11
CLN3-254ENST00000637050 OR51I2Q9H344 312 aa15.71■□□□□ 0.11
CLN3-254ENST00000637050 A0A0A6YYD4 124 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 MLNRO43193 412 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 PRB1P04280 392 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 CHRM2P08172 466 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms