RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 NSL1Q96IY1 281 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 TTTY10Q9BZA0 68 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 NIPAL2Q9H841 368 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 ABCB9Q9NP78 766 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 FBLN5Q9UBX5 448 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 LAMP5Q9UJQ1 280 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 ZNF222Q9UK12 451 aa13.16□□□□□ -0.3
CLN3-246ENST00000636228 SF3B6Q9Y3B4 125 aaKnown RBP13.16□□□□□ -0.3
CLN3-246ENST00000636228 PRB2P02812 416 aaPredicted RBP13.15□□□□□ -0.3
CLN3-246ENST00000636228 MRPL3P09001 348 aaKnown RBP13.15□□□□□ -0.3
CLN3-246ENST00000636228 RAP2AP10114 183 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 ALOX5APP20292 161 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 MAP2K3P46734 347 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 CEBPDP49716 269 aaPredicted RBP13.15□□□□□ -0.3
CLN3-246ENST00000636228 MNAT1P51948 309 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 HAGHLQ6PII5 290 aaPredicted RBP13.15□□□□□ -0.3
CLN3-246ENST00000636228 COMMD2Q86X83 199 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 ADGRG5Q8IZF4 528 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 OR51G2Q8NGK0 314 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 AQP3Q92482 292 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 MUC13Q9H3R2 512 aa13.15□□□□□ -0.3
CLN3-246ENST00000636228 TMEM269A0A1B0GVZ9 245 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 RFPL4AA6NLU0 287 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 PRR32B1ATL7 298 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 RFPL4AL1F8VTS6 287 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 GNGT2O14610 69 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 EFNB2P52799 333 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 GNG3P63215 75 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 CDK5Q00535 292 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 APOFQ13790 326 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 HERPUD1Q15011 391 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 CEACAM21Q3KPI0 293 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 Q6ZTK2 550 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 TRPM8Q7Z2W7 1104 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 LYG1Q8N1E2 194 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 CD177Q8N6Q3 437 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 PAPD5Q8NDF8 572 aaKnown RBP13.14□□□□□ -0.31
CLN3-246ENST00000636228 OR4M1Q8NGD0 313 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 OR5D13Q8NGL4 314 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 ZNF671Q8TAW3 534 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 OR51E1Q8TCB6 317 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 LRGUKQ96M69 825 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 PBOV1Q9GZY1 135 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 FAM206AQ9NX38 181 aa13.14□□□□□ -0.31
CLN3-246ENST00000636228 PRODHO43272 600 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 SYNGR1O43759 233 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 HMGN1P05114 100 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 T-ENOLP0DO92 83 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 OSMP13725 252 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 FAHP16930 419 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 SLC2A5P22732 501 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 COX7A1P24310 79 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 PLCXD3Q63HM9 321 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 TMEM200BQ69YZ2 307 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 ACP7Q6ZNF0 438 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 THAP5Q7Z6K1 395 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 ARHGAP24Q8N264 748 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 KLHDC1Q8N7A1 406 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 OR5A2Q8NGI9 324 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 SDSLQ96GA7 329 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 TEAD3Q99594 435 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 MEGF9Q9H1U4 602 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 GPR84Q9NQS5 396 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 COPS3Q9UNS2 423 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 PIGLQ9Y2B2 252 aa13.13□□□□□ -0.31
CLN3-246ENST00000636228 TRBV23-1A0A0A0MS06 115 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 MEGF11A6BM72 1044 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 ARRDC5A6NEK1 342 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 MAGEB4O15481 346 aaPredicted RBP13.12□□□□□ -0.31
CLN3-246ENST00000636228 MTRF1O75570 445 aaKnown RBP13.12□□□□□ -0.31
CLN3-246ENST00000636228 VSIG10L2P0DP72 767 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 CCL3L1P16619 93 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 KIR2DS4P43632 304 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 BMXP51813 675 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 MFGE8Q08431 387 aaPredicted RBP13.12□□□□□ -0.31
CLN3-246ENST00000636228 RIPPLY1Q0D2K3 151 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 LRRC75BQ2VPJ9 315 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 PLA1AQ53H76 456 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 SLC35D3Q5M8T2 416 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 CRIP3Q6Q6R5 217 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 C11orf42Q8N5U0 333 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 OR4C13Q8NGP0 309 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 CANT1Q8WVQ1 401 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 ASB9Q96DX5 294 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 NKX3-1Q99801 234 aaPredicted RBP13.12□□□□□ -0.31
CLN3-246ENST00000636228 FAM234AQ9H0X4 552 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 TVP23BQ9NYZ1 205 aa13.12□□□□□ -0.31
CLN3-246ENST00000636228 A0A0U1RQV5 110 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 MEX3AA1L020 520 aaKnown RBP13.11□□□□□ -0.31
CLN3-246ENST00000636228 CCDC182A6NF36 153 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 A6NIN4 97 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 GSC2O15499 205 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 CHST1O43916 411 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 E2F6O75461 281 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 PRDX2P32119 198 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 RAB13P51153 203 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 RPL31P62899 125 aaKnown RBP13.11□□□□□ -0.31
CLN3-246ENST00000636228 BEAN1Q3B7T3 259 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 KCTD18Q6PI47 426 aaPredicted RBP13.11□□□□□ -0.31
CLN3-246ENST00000636228 ZNF782Q6ZMW2 699 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms