RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 RPL13AP3Q6NVV1 102 aa11.82□□□□□ -0.52
PNKP-218ENST00000625299 ERI1Q8IV48 349 aaKnown RBP11.82□□□□□ -0.52
PNKP-218ENST00000625299 C11orf42Q8N5U0 333 aa11.82□□□□□ -0.52
PNKP-218ENST00000625299 FOXRED1Q96CU9 486 aaPredicted RBP11.82□□□□□ -0.52
PNKP-218ENST00000625299 SDSLQ96GA7 329 aa11.82□□□□□ -0.52
PNKP-218ENST00000625299 RCC1LQ96I51 464 aaKnown RBP11.82□□□□□ -0.52
PNKP-218ENST00000625299 B9D2Q9BPU9 175 aa11.82□□□□□ -0.52
PNKP-218ENST00000625299 ABHD6Q9BV23 337 aa11.82□□□□□ -0.52
PNKP-218ENST00000625299 RGCCQ9H4X1 137 aa11.82□□□□□ -0.52
PNKP-218ENST00000625299 CD300AQ9UGN4 299 aa11.82□□□□□ -0.52
PNKP-218ENST00000625299 RFPL4AA6NLU0 287 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 ZNF732B4DXR9 585 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 RFPL4AL1F8VTS6 287 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 NDUFAB1O14561 156 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 SLC22A2O15244 555 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 H2BFMP0C1H6 154 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 CEBPDP49716 269 aaPredicted RBP11.81□□□□□ -0.52
PNKP-218ENST00000625299 DYNC1I2Q13409 638 aaKnown RBP11.81□□□□□ -0.52
PNKP-218ENST00000625299 ZNF273Q14593 569 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 FAM76BQ5HYJ3 339 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 DMRTC1Q5HYR2 192 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 C8orf82Q6P1X6 216 aaPredicted RBP11.81□□□□□ -0.52
PNKP-218ENST00000625299 RNF148Q8N7C7 305 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 OR9Q2Q8NGE9 314 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 OR8D4Q8NGM9 314 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 OR2T27Q8NH04 317 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 FAM81AQ8TBF8 368 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 RNF133Q8WVZ7 376 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 DPF1Q92782 380 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 MCUR1Q96AQ8 359 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 PYURFQ96I23 114 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 INTS14Q96SY0 518 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 AMELYQ99218 206 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 EFCAB1Q9HAE3 211 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 TBL2Q9Y4P3 447 aaKnown RBP11.81□□□□□ -0.52
PNKP-218ENST00000625299 LRP12Q9Y561 859 aa11.81□□□□□ -0.52
PNKP-218ENST00000625299 MEX3AA1L020 520 aaKnown RBP11.8□□□□□ -0.52
PNKP-218ENST00000625299 FAM90A8PA6NJQ4 464 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 SLC1A7O00341 560 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 DUS4LO95620 317 aaKnown RBP11.8□□□□□ -0.52
PNKP-218ENST00000625299 CLIC3O95833 236 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 JUNBP17275 347 aaPredicted RBP11.8□□□□□ -0.52
PNKP-218ENST00000625299 OPRL1P41146 370 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 GNG3P63215 75 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 HAGHLQ6PII5 290 aaPredicted RBP11.8□□□□□ -0.52
PNKP-218ENST00000625299 CENPVQ7Z7K6 275 aaPredicted RBP11.8□□□□□ -0.52
PNKP-218ENST00000625299 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.8□□□□□ -0.52
PNKP-218ENST00000625299 CD177Q8N6Q3 437 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 ZNF671Q8TAW3 534 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 OTULINQ96BN8 352 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 LYZL4Q96KX0 146 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 ZNF488Q96MN9 340 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 TSSK6Q9BXA6 273 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 OR51I2Q9H344 312 aa11.8□□□□□ -0.52
PNKP-218ENST00000625299 TSSC4Q9Y5U2 329 aaPredicted RBP11.8□□□□□ -0.52
PNKP-218ENST00000625299 MTRF1O75570 445 aaKnown RBP11.79□□□□□ -0.52
PNKP-218ENST00000625299 SEMG1P04279 462 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 FABP3P05413 133 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 BLVRAP53004 296 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 PSME3P61289 254 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 SLC34A1Q06495 639 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 SMIM21Q3B7S5 101 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 TCTEX1D4Q5JR98 221 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 LDLRAD2Q5SZI1 272 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 ACP7Q6ZNF0 438 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 BATF2Q8N1L9 274 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 OR13D1Q8NGV5 346 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 MYDGFQ969H8 173 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 MALSU1Q96EH3 234 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 NMNAT2Q9BZQ4 307 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 MED20Q9H944 212 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 INPP5EQ9NRR6 644 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 ABCD2Q9UBJ2 740 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 HILPDAQ9Y5L2 63 aa11.79□□□□□ -0.52
PNKP-218ENST00000625299 ODF3BA8MYP8 253 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 SOX14O95416 240 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 GSTT1P30711 240 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 PRDX2P32119 198 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 OR12D2P58182 307 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 LINC01590Q5TEZ4 76 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 MOB3CQ70IA8 216 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 COMMD2Q86X83 199 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 ZNF561Q8N587 486 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 OR8B12Q8NGG6 310 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 OR4Q3Q8NH05 313 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 AQP3Q92482 292 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 BTBD10Q9BSF8 475 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 CHID1Q9BWS9 393 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 ARMC1Q9NVT9 282 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 IL20Q9NYY1 176 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 OR14J1Q9UGF5 321 aa11.78□□□□□ -0.52
PNKP-218ENST00000625299 FAM183AA6NL82 134 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 RIIAD1A6NNX1 92 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 IFNGP01579 166 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 CHRM2P08172 466 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 CCDC159P0C7I6 412 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 ZNF3P17036 446 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 EGFEM1PQ0D2K5 195 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 CEACAM21Q3KPI0 293 aa11.77□□□□□ -0.53
PNKP-218ENST00000625299 SAMD4BQ5PRF9 694 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms