RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PLEKHA1Q9HB21 404 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 BABAM2Q9NXR7 383 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CNOT2Q9NZN8 540 aaKnown RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 IL36RNQ9UBH0 155 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 LSM2Q9Y333 95 aaKnown RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 EXOSC1Q9Y3B2 195 aaKnown RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 PPIAL4EA0A075B759 164 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 A0A1W2PPK0 400 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 PQLC2LA1A4F0 135 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 EFCAB10A6NFE3 127 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 PPIAL4DF5H284 164 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 RRP9O43818 475 aaKnown RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 MTRF1O75570 445 aaKnown RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 ISG15P05161 165 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 PPIAL4FP0DN26 164 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 MYL12AP19105 171 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CEBPDP49716 269 aaPredicted RBP11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CCR9P51686 369 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 NANOGP1Q8N7R0 232 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 OR5D18Q8NGL1 313 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 OR13C3Q8NGS6 347 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 OR5AK2Q8NH90 309 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 AQP3Q92482 292 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 TIMD4Q96H15 378 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 MICU1Q9BPX6 476 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 RTL8AQ9BWD3 113 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 CHST5Q9GZS9 411 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 DUSP21Q9H596 190 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 PPIAL4AQ9Y536 164 aa11.26□□□□□ -0.61
LINC00540-202ENST00000616974 KIAA1324LA8MWY0 1029 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-202ENST00000616974 TRAPPC2LH3BP13 241 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 MDH2P40926 338 aaKnown RBP11.25□□□□□ -0.61
LINC00540-202ENST00000616974 GBX2P52951 348 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-202ENST00000616974 ZNF181Q2M3W8 571 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 CYB5R2Q6BCY4 276 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 DMKNQ6E0U4 476 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-202ENST00000616974 FTMTQ8N4E7 242 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 GHSRQ92847 366 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 VCX3BQ9H321 246 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 C14orf119Q9NWQ9 140 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 HHLA2Q9UM44 414 aa11.25□□□□□ -0.61
LINC00540-202ENST00000616974 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.24□□□□□ -0.61
LINC00540-202ENST00000616974 SRRM5B3KS81 715 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 TNFRSF13BO14836 293 aaPredicted RBP11.24□□□□□ -0.61
LINC00540-202ENST00000616974 TGM4P49221 684 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 IRF3Q14653 427 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 ZNF841Q6ZN19 808 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 FAM216BQ8N7L0 139 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 OR52N1Q8NH53 320 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 CYYR1Q96J86 154 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 PATZ1Q9HBE1 687 aaKnown RBP11.24□□□□□ -0.61
LINC00540-202ENST00000616974 HIF1ANQ9NWT6 349 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 METRNQ9UJH8 293 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 RAB26Q9ULW5 256 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 OGG1O15527 345 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 SPRY1O43609 319 aaPredicted RBP11.24□□□□□ -0.61
LINC00540-202ENST00000616974 WNT2P09544 360 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 ATP6V1B1P15313 513 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 HOXB4P17483 251 aaPredicted RBP11.24□□□□□ -0.61
LINC00540-202ENST00000616974 ADRA2CP18825 462 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 GNG3P63215 75 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 FAM27D1Q5T7N8 215 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 TMEM244Q5VVB8 128 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 SPERTQ8NA61 448 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 OR5A2Q8NGI9 324 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 SMIM19Q96E16 107 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 C1orf159Q96HA4 380 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 CCL13Q99616 98 aa11.24□□□□□ -0.61
LINC00540-202ENST00000616974 OOEPA6NGQ2 149 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 LRRC30A6NM36 301 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 A8MV72 311 aaPredicted RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 F5H0A9 414 aaPredicted RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 ANGPTL7O43827 346 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 CELP19835 753 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 NPBWR2P48146 333 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 WNT4P56705 351 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 RPL22L1Q6P5R6 122 aaKnown RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 METAP1DQ6UB28 335 aaPredicted RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 TMPRSS11AQ6ZMR5 421 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 PEG10Q86TG7 708 aaKnown RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 LINC01356Q8N9X3 169 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 OR11L1Q8NGX0 322 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 TSEN15Q8WW01 171 aaKnown RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 OR14A2Q96R54 314 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 MTCH1Q9NZJ7 389 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 PCDHB10Q9UN67 800 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 IGKV1-12A0A0C4DH73 117 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 TMEM212A6NML5 194 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 MYL12BO14950 172 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 IGKV1D-12P01611 117 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 MSMBP08118 114 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 IRF2P14316 349 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 RPS2P15880 293 aaKnown RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 SRSF2Q01130 221 aaKnown RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 ERGIC1Q969X5 290 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 SLAMF9Q96A28 289 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 HIST1H2AAQ96QV6 131 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 CCDC90BQ9GZT6 254 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 PPIL3Q9H2H8 161 aaKnown RBP11.23□□□□□ -0.61
LINC00540-202ENST00000616974 ELL3Q9HB65 397 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms