RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KCTD18Q6PI47 426 aaPredicted RBP15.67■□□□□ 0.1
CDX1-202ENST00000616154 C17orf107Q6ZR85 190 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 WDR86Q86TI4 376 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 FTMTQ8N4E7 242 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 GCSAMQ8N6F7 178 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 KIR3DL3Q8N743 410 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 OR8B12Q8NGG6 310 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 GATAD2BQ8WXI9 593 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 ASB17Q8WXJ9 295 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 MNTQ99583 582 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 SIRPDQ9H106 197 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 TLNRD1Q9H1K6 362 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 DUSP21Q9H596 190 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 ADGRL4Q9HBW9 690 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 FAM206AQ9NX38 181 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 CNOT2Q9NZN8 540 aaKnown RBP15.67■□□□□ 0.1
CDX1-202ENST00000616154 EXOGQ9Y2C4 368 aaKnown RBP15.67■□□□□ 0.1
CDX1-202ENST00000616154 N6AMT1Q9Y5N5 214 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 A0A0U1RQV5 110 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 PRR32B1ATL7 298 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 XPNPEP2O43895 674 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 CST4P01036 141 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 ACKR3P25106 362 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 RPL15P61313 204 aaKnown RBP15.66■□□□□ 0.1
CDX1-202ENST00000616154 SLC35A2P78381 396 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 POU4F2Q12837 409 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 OLFML2AQ68BL7 652 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 C11orf53Q8IXP5 236 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 ZNF679Q8IYX0 411 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 SSMEM1Q8WWF3 244 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 ITPKCQ96DU7 683 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 LYZL4Q96KX0 146 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 OR8B4Q96RC9 309 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 CNN2Q99439 309 aaKnown RBP15.66■□□□□ 0.1
CDX1-202ENST00000616154 JAM3Q9BX67 310 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 ABCB9Q9NP78 766 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 FGF20Q9NP95 211 aaPredicted RBP15.66■□□□□ 0.1
CDX1-202ENST00000616154 ACOXLQ9NUZ1 547 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 COPS3Q9UNS2 423 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 RHBDD3Q9Y3P4 386 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 MPC1Q9Y5U8 109 aa15.66■□□□□ 0.1
CDX1-202ENST00000616154 IGHV1-69DA0A0B4J2H0 117 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 CLPSL1A2RUU4 121 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 A6NLC8 198 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 FCN3O75636 299 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 ECDO95905 644 aaPredicted RBP15.65■□□□□ 0.1
CDX1-202ENST00000616154 IGHV1-69P01742 117 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 GYPAP02724 150 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 GRPP07492 148 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 HCCSP53701 268 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 SRSF4Q08170 494 aaKnown RBP15.65■□□□□ 0.1
CDX1-202ENST00000616154 RAB40BQ12829 278 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 FAM76BQ5HYJ3 339 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 TEX36Q5VZQ5 186 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 ZNF826PQ6ZT77 177 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 KRT77Q7Z794 578 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 FAM90A1Q86YD7 464 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 BPIFB6Q8NFQ5 453 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 GGHQ92820 318 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 LGALS12Q96DT0 336 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 RNFT2Q96EX2 444 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 CITED1Q99966 193 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 MROQ9BYG7 248 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 AMBNQ9NP70 447 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 BRD7Q9NPI1 651 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 PAK1IP1Q9NWT1 392 aaPredicted RBP15.65■□□□□ 0.1
CDX1-202ENST00000616154 KAAG1Q9UBP8 84 aa15.65■□□□□ 0.1
CDX1-202ENST00000616154 hCG_1807616A0A1W2PRN6 198 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 EFCAB10A6NFE3 127 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 SRSF10O75494 262 aaKnown RBP15.64■□□□□ 0.09
CDX1-202ENST00000616154 IGHA1P01876 353 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 MRPL3P09001 348 aaKnown RBP15.64■□□□□ 0.09
CDX1-202ENST00000616154 KLHL22Q53GT1 634 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 BTN2A1Q7KYR7 527 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 OR1M1Q8NGA1 313 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 OR8S1Q8NH09 359 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 TBC1D15Q8TC07 691 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 DYRK2Q92630 601 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 LHX4Q969G2 390 aa15.64■□□□□ 0.09
CDX1-202ENST00000616154 NR1H4Q96RI1 486 aaPredicted RBP15.64■□□□□ 0.09
CDX1-202ENST00000616154 PAPOLGQ9BWT3 736 aaKnown RBP15.64■□□□□ 0.09
CDX1-202ENST00000616154 NUFIP1Q9UHK0 495 aaKnown RBP15.64■□□□□ 0.09
CDX1-202ENST00000616154 IRGMA1A4Y4 181 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 DVL1O14640 695 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 ATP6V1B1P15313 513 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 GABARAPL2P60520 117 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 KCTD21Q4G0X4 260 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 MIDNQ504T8 468 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 BRICD5Q6PL45 260 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 LDLRAD3Q86YD5 345 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 OR52I1Q8NGK6 324 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 PPP1R3EQ9H7J1 279 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 SCN3BQ9NY72 215 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 BLOC1S6Q9UL45 172 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 TPRKBQ9Y3C4 175 aa15.63■□□□□ 0.09
CDX1-202ENST00000616154 PRKDCP78527 4128 aaKnown RBP15.62■□□□□ 0.09
CDX1-202ENST00000616154 TMEM269A0A1B0GVZ9 245 aa15.62■□□□□ 0.09
CDX1-202ENST00000616154 TMEM210A6NLX4 147 aa15.62■□□□□ 0.09
CDX1-202ENST00000616154 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.62■□□□□ 0.09
CDX1-202ENST00000616154 GNALP38405 381 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms