RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SDR39U1Q9NRG7 319 aaPredicted RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 TUBG2Q9NRH3 451 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 SDHAF3Q9NRP4 125 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 GHRLQ9UBU3 117 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 GLS2Q9UI32 602 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 RWDD2AQ9UIY3 292 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 SLC7A7Q9UM01 511 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 CSDC2Q9Y534 153 aaKnown RBP3.43□□□□□ -1.86
LINC00540-201ENST00000611481 CACNG2Q9Y698 323 aa3.43□□□□□ -1.86
LINC00540-201ENST00000611481 A0A1B0GU03 582 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF724A8MTY0 619 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF487B1APH4 448 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 OR7A17O14581 309 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 CST8O60676 142 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 SH3BGRLO75368 114 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 KRT33AO76009 404 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 OR2F2O95006 317 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ATP1B1P05026 303 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 FCER2P06734 321 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 SLC35E2BP0CK96 405 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 OR12D1P0DN82 309 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 IGHV4-30-4P0DP06 118 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ETS2P15036 469 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 GSTM3P21266 225 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 CCNG1P51959 295 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 TPM4P67936 248 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 DLG1Q12959 904 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 KLF5Q13887 457 aaPredicted RBP3.42□□□□□ -1.86
LINC00540-201ENST00000611481 AANATQ16613 207 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF829Q3KNS6 432 aaPredicted RBP3.42□□□□□ -1.86
LINC00540-201ENST00000611481 SNAI3Q3KNW1 292 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 TTMPQ5BVD1 217 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 TECRLQ5HYJ1 363 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 PDZK1Q5T2W1 519 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 LRRN1Q6UXK5 716 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 TMIGD1Q6UXZ0 262 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 TUBA1AQ71U36 451 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 MARCH3Q86UD3 253 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 KLHDC8BQ8IXV7 354 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 CPNE9Q8IYJ1 553 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 FAM58AQ8N1B3 248 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 CENPSQ8N2Z9 138 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF114Q8NC26 417 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ATP6V1C2Q8NEY4 427 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 STXBP6Q8NFX7 210 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 TTLQ8NG68 377 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 OR1F12Q8NHA8 337 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 OR2T6Q8NHC8 308 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 C8orf46Q8TAG6 207 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 GPR148Q8TDV2 347 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 RNF138Q8WVD3 245 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 C4orf45Q96LM5 186 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 C3orf30Q96M34 536 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 TECTBQ96PL2 329 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ROGDIQ9GZN7 287 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 LAT2Q9GZY6 243 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF385DQ9H6B1 395 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 EXD2Q9NVH0 621 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 MYEF2Q9P2K5 600 aaKnown RBP3.42□□□□□ -1.86
LINC00540-201ENST00000611481 PSMC3IPQ9P2W1 217 aaPredicted RBP3.42□□□□□ -1.86
LINC00540-201ENST00000611481 CD300AQ9UGN4 299 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 PITPNC1Q9UKF7 332 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 VPREB3Q9UKI3 123 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 PRDM4Q9UKN5 801 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 IKZF2Q9UKS7 526 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 CFL2Q9Y281 166 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 PLLPQ9Y342 182 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 OR2W1Q9Y3N9 320 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 RHBDD3Q9Y3P4 386 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 VPS13DQ5THJ4 4388 aa3.42□□□□□ -1.86
LINC00540-201ENST00000611481 HMCN2Q8NDA2 5059 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 IGHV2OR16-5A0A0B4J2B6 119 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 FAM172BPA6NC97 362 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 FBLL1A6NHQ2 334 aaKnown RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 A8MXK9 166 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 H7C0C1 242 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 SAP18O00422 153 aaKnown RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 IMPA2O14732 288 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 RS1O15537 224 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 FADS1O60427 444 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 RAMP3O60896 148 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 GLRA3O75311 464 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 PROSCO94903 275 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 NXPH2O95156 264 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 TPM3P06753 285 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 PRPS2P11908 318 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 HTR2BP41595 481 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 SSR2P43308 183 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 KIR2DS4P43632 304 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 PPICP45877 212 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 EVX1P49640 407 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 CTAG1AP78358 180 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 TGFBR3Q03167 851 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 ACVR1Q04771 509 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF155Q12901 538 aaPredicted RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 SLAQ13239 276 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 USF2Q15853 346 aaPredicted RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 PLPPR5Q32ZL2 321 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 TMEM176BQ3YBM2 270 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms