RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ST8SIA4Q92187 359 aa12.52□□□□□ -0.4
VRK3-217ENST00000599538 SPSB4Q96A44 273 aa12.52□□□□□ -0.4
VRK3-217ENST00000599538 Q96M66 194 aa12.52□□□□□ -0.4
VRK3-217ENST00000599538 PRRT1Q99946 306 aa12.52□□□□□ -0.4
VRK3-217ENST00000599538 HDHD3Q9BSH5 251 aaPredicted RBP12.52□□□□□ -0.4
VRK3-217ENST00000599538 ST6GALNAC5Q9BVH7 336 aa12.52□□□□□ -0.4
VRK3-217ENST00000599538 SLC22A20A6NK97 555 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 NAT1P18440 290 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 RBP2P50120 134 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 ZNF81P51508 661 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 TSPAN5P62079 268 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 CLN3Q13286 438 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 GK2Q14410 553 aaPredicted RBP12.52□□□□□ -0.41
VRK3-217ENST00000599538 TAF9Q16594 264 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 DEFB109BQ30KR1 87 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 MOB3CQ70IA8 216 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 ADAD2Q8NCV1 583 aaKnown RBP12.52□□□□□ -0.41
VRK3-217ENST00000599538 BORCS8Q96FH0 119 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 OCSTAMPQ9BR26 566 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 RGCCQ9H4X1 137 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 PTTG3PQ9NZH4 202 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 ZNF629Q9UEG4 869 aaPredicted RBP12.52□□□□□ -0.41
VRK3-217ENST00000599538 OPN4Q9UHM6 478 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 PLEKHA6Q9Y2H5 1048 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 SVILO95425 2214 aa12.52□□□□□ -0.41
VRK3-217ENST00000599538 SPTBN2O15020 2390 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 IGKV1D-8A0A087WSZ0 117 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 H3BUI4 141 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 XRCC2O43543 280 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 MPZP25189 248 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 CNN3Q15417 329 aaKnown RBP12.51□□□□□ -0.41
VRK3-217ENST00000599538 NDUFA5Q16718 116 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 PNLIPRP3Q17RR3 467 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 CALHM1Q8IU99 346 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 STEAP2Q8NFT2 490 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 LILRB4Q8NHJ6 448 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 MARCH1Q8TCQ1 289 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 GPR160Q9UJ42 338 aa12.51□□□□□ -0.41
VRK3-217ENST00000599538 OR6C65A6NJZ3 312 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 ZNF850A8MQ14 1090 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 SDCBPO00560 298 aaPredicted RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 TM4SF5O14894 197 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 SLC22A5O76082 557 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 MPC2O95563 127 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 SFTPBP07988 381 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 ZNF24P17028 368 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 PRKACBP22694 351 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 CPT2P23786 658 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 RAP2BP61225 183 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 PPP1R1AQ13522 171 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 PDCD1Q15116 288 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 RSU1Q15404 277 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 NKAPLQ5M9Q1 402 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 LY6G6FQ5SQ64 297 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 PLCXD3Q63HM9 321 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 LIN54Q6MZP7 749 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 BRICD5Q6PL45 260 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 GCNT2Q8N0V5 402 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 OR56B2PQ8NGI1 322 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 CCDC107Q8WV48 283 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 POM121L2Q96KW2 1035 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 FGF23Q9GZV9 251 aaPredicted RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 METTL9Q9H1A3 318 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.5□□□□□ -0.41
VRK3-217ENST00000599538 ZNF391Q9UJN7 358 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 ITGB1BP2Q9UKP3 347 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 STARD10Q9Y365 291 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 PTPRZ1P23471 2315 aaPredicted RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 DCHS1Q96JQ0 3298 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 ZNF816-ZNF321PA0A0X1KG74 233 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 FIGNL2A6NMB9 653 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 HLA-AP01891 365 aaKnown RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 IFNA6P05013 189 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 CXCL2P19875 107 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 SPINK2P20155 84 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 HTR2BP41595 481 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 NOVA1P51513 510 aaKnown RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 PER3P56645 1201 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 PIGYQ3MUY2 71 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 IGFL2Q6UWQ7 119 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 SLC25A42Q86VD7 318 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 C12orf45Q8N5I9 185 aaPredicted RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 OR8H1Q8NGG4 311 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 REPIN1Q9BWE0 567 aaKnown RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 MYOZ1Q9NP98 299 aaPredicted RBP12.5□□□□□ -0.41
VRK3-217ENST00000599538 DLL3Q9NYJ7 618 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 ATPIF1Q9UII2 106 aa12.5□□□□□ -0.41
VRK3-217ENST00000599538 PRR14LQ5THK1 2151 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 PLSCR5A0PG75 271 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 CDK2AP1O14519 115 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 CSTBP04080 98 aaKnown RBP12.49□□□□□ -0.41
VRK3-217ENST00000599538 TPOP07202 933 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 ZBTB25P24278 435 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 SNU13P55769 128 aaKnown RBP12.49□□□□□ -0.41
VRK3-217ENST00000599538 STK11Q15831 433 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 FBXW9Q5XUX1 488 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 LHFPL2Q6ZUX7 228 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 HOGA1Q86XE5 327 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 DYRK2Q92630 601 aa12.49□□□□□ -0.41
VRK3-217ENST00000599538 FAAP24Q9BTP7 215 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms