RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 H0YAE9 185 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 RNASEK-C17orf49H0YIS7 233 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 MTRF1O75570 445 aaKnown RBP8.04□□□□□ -1.12
VRK3-216ENST00000599342 RHBDL1O75783 438 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 TFF1P04155 84 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 DCTDP32321 178 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 SAA4P35542 130 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 CRISP1P54107 249 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 ACTR3P61158 418 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 DEFA6Q01524 100 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 PRB3Q04118 309 aaPredicted RBP8.04□□□□□ -1.12
VRK3-216ENST00000599342 SMIM21Q3B7S5 101 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 ZBTB37Q5TC79 503 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 HAGHLQ6PII5 290 aaPredicted RBP8.04□□□□□ -1.12
VRK3-216ENST00000599342 C1orf122Q6ZSJ8 110 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 FAM185AQ8N0U4 392 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 Q8N7P7 452 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 OR5A2Q8NGI9 324 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 OR5R1Q8NH85 324 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 LINC01006Q8NI28 216 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 OR51E1Q8TCB6 317 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 UBE2FQ969M7 185 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 NRBF2Q96F24 287 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 DUS3LQ96G46 650 aaKnown RBP8.04□□□□□ -1.12
VRK3-216ENST00000599342 OR8B4Q96RC9 309 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 OR51I2Q9H344 312 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 MOB1AQ9H8S9 216 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 GPR84Q9NQS5 396 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 H2AFY2Q9P0M6 372 aaPredicted RBP8.04□□□□□ -1.12
VRK3-216ENST00000599342 POMPQ9Y244 141 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 PIGLQ9Y2B2 252 aa8.04□□□□□ -1.12
VRK3-216ENST00000599342 IGKV1D-17A0A075B6S4 117 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 TRBV23-1A0A0A0MS06 115 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 A0A1W2PPH5 198 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ANKRD61A6NGH8 418 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 SLC22A31A6NKX4 558 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 LOC110117498-PIK3R3F6TDL0 507 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 DHRS3O75911 302 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 DNAJC8O75937 253 aaPredicted RBP8.03□□□□□ -1.12
VRK3-216ENST00000599342 CLPXO76031 633 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 NRASP01111 189 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 PSG2P11465 335 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 FAHP16930 419 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 TGFBR2P37173 567 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 UBE2E1P51965 193 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 DLX1P56177 255 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ESRRGP62508 458 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ROM1Q03395 351 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ACSM1Q08AH1 577 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 PTGES3Q15185 160 aaKnown RBP8.03□□□□□ -1.12
VRK3-216ENST00000599342 TAF9Q16594 264 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 MIDNQ504T8 468 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 DMRTC1Q5HYR2 192 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ZNF684Q5T5D7 378 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 Q6ZSV7 163 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ZNF573Q86YE8 665 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ZSCAN4Q8NAM6 433 aaPredicted RBP8.03□□□□□ -1.12
VRK3-216ENST00000599342 ZNRF1Q8ND25 227 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 OR5D13Q8NGL4 314 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 BCAS4Q8TDM0 211 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 AQP3Q92482 292 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 MMP27Q9H306 513 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 ELL3Q9HB65 397 aaPredicted RBP8.03□□□□□ -1.12
VRK3-216ENST00000599342 TCF7L1Q9HCS4 588 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 KRT84Q9NSB2 600 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 RASL12Q9NYN1 266 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 NUFIP1Q9UHK0 495 aaKnown RBP8.03□□□□□ -1.12
VRK3-216ENST00000599342 COPS3Q9UNS2 423 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 POLDIP2Q9Y2S7 368 aa8.03□□□□□ -1.12
VRK3-216ENST00000599342 SF3B6Q9Y3B4 125 aaKnown RBP8.03□□□□□ -1.12
VRK3-216ENST00000599342 RFPL4AA6NLU0 287 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 ZNF670-ZNF695F2Z2N8 137 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 RFPL4AL1F8VTS6 287 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 J3QT63 122 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 SLC1A7O00341 560 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 ANGPTL7O43827 346 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 PRKYO43930 277 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 IGLV3-1P01715 115 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 TTRP02766 147 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 HAAOP46952 286 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 DAPP51397 102 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 PROK1P58294 105 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 CXCR4P61073 352 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 MFGE8Q08431 387 aaPredicted RBP8.02□□□□□ -1.13
VRK3-216ENST00000599342 OCLNQ16625 522 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 PDLIM3Q53GG5 364 aaPredicted RBP8.02□□□□□ -1.13
VRK3-216ENST00000599342 CLVS2Q5SYC1 327 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 BCL2L15Q5TBC7 163 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 NXNL2Q5VZ03 156 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 FAHD1Q6P587 224 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 ZNF322Q6U7Q0 402 aaPredicted RBP8.02□□□□□ -1.13
VRK3-216ENST00000599342 ACP7Q6ZNF0 438 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 MEPCEQ7L2J0 689 aaKnown RBP8.02□□□□□ -1.13
VRK3-216ENST00000599342 KRT74Q7RTS7 529 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 GID4Q8IVV7 300 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 SLC35F2Q8IXU6 374 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 PNKDQ8N490 385 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 ZNF561Q8N587 486 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 POC1AQ8NBT0 407 aa8.02□□□□□ -1.13
VRK3-216ENST00000599342 OR51G2Q8NGK0 314 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms