RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 SEH1LQ96EE3 360 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 CCL13Q99616 98 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ADI1Q9BV57 179 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 WDR13Q9H1Z4 485 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 GPR173Q9NS66 373 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 AASSQ9UDR5 926 aa13.45□□□□□ -0.26
TRIM28-206ENST00000595974 ANKRD61A6NGH8 418 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 J3QT63 122 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 RHBDL1O75783 438 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 GLRA1P23415 457 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 KIR3DL2P43630 455 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 GMFBP60983 142 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 RCN1Q15293 331 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 TUSC1Q2TAM9 212 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 DMRTC1Q5HYR2 192 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 FDX2Q6P4F2 183 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 HAGHLQ6PII5 290 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-206ENST00000595974 PRSS35Q8N3Z0 413 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 PACRGLQ8N7B6 248 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 FAM216BQ8N7L0 139 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 OR2G2Q8NGZ5 317 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 ST8SIA4Q92187 359 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 C10orf35Q96D05 121 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 INPP5EQ9NRR6 644 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 NLKQ9UBE8 527 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 POLDIP2Q9Y2S7 368 aa13.44□□□□□ -0.26
TRIM28-206ENST00000595974 TRAV40A0A0B4J280 105 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 PQLC2LA1A4F0 135 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 GPR37O15354 613 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 FCN3O75636 299 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 GATBO75879 557 aaKnown RBP13.43□□□□□ -0.26
TRIM28-206ENST00000595974 RGS9O75916 674 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-206ENST00000595974 FADS2O95864 444 aaKnown RBP13.43□□□□□ -0.26
TRIM28-206ENST00000595974 IGHA1P01876 353 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 OR12D2P58182 307 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 FGF12P61328 243 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 RAB40BQ12829 278 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 TMEM244Q5VVB8 128 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF788Q6ZQV5 615 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 BTN2A1Q7KYR7 527 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 EGFL6Q8IUX8 553 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 POC1AQ8NBT0 407 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 ANGPTL6Q8NI99 470 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 C22orf15Q8WYQ4 148 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 RNF166Q96A37 237 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-206ENST00000595974 TMIGD2Q96BF3 282 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 CHST5Q9GZS9 411 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 RASSF4Q9H2L5 321 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 SNTG1Q9NSN8 517 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF69Q9UC07 566 aa13.43□□□□□ -0.26
TRIM28-206ENST00000595974 RPL36Q9Y3U8 105 aaKnown RBP13.43□□□□□ -0.26
TRIM28-206ENST00000595974 A0A1B0GW55 424 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 A6NIN4 97 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 OR2AT4A6NND4 320 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF879B4DU55 563 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 NDUFB3O43676 98 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 PLATP00750 562 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 HTR1AP08908 422 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4L2P0CJ85 424 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4L3P0CJ86 424 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4L4P0CJ87 422 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4L5P0CJ88 424 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4L6P0CJ89 424 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4L7P0CJ90 424 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 AMY2BP19961 511 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 MPZP25189 248 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 HAAOP46952 286 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 TGM4P49221 684 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 ELF3P78545 371 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-206ENST00000595974 IL13RA1P78552 427 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 GALEQ14376 348 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 LRRC36Q1X8D7 754 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 SMIM21Q3B7S5 101 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 LRRC10Q5BKY1 277 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 LPCAT4Q643R3 524 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4L9Q6RFH8 374 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-206ENST00000595974 C9orf139Q6ZV77 190 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 SYS1Q8N2H4 156 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 OR5T2Q8NGG2 359 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 APH1BQ8WW43 257 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 PP6455Q8WZ26 134 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 PELI1Q96FA3 418 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 MED30Q96HR3 178 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 C4orf36Q96KX1 117 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DMRTB1Q96MA1 342 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 GAFA1Q96PS6 74 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 ALG8Q9BVK2 526 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 MS4A7Q9GZW8 240 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-206ENST00000595974 MRPS18AQ9NVS2 196 aaKnown RBP13.42□□□□□ -0.26
TRIM28-206ENST00000595974 RASL12Q9NYN1 266 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 DUX4Q9UBX2 424 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 RPUSD1Q9UJJ7 312 aaKnown RBP13.42□□□□□ -0.26
TRIM28-206ENST00000595974 SLC7A11Q9UPY5 501 aa13.42□□□□□ -0.26
TRIM28-206ENST00000595974 H3BSH0 61 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 TRIM77I1YAP6 450 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 J3QLW9 94 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 SIGLEC5O15389 551 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 NOS1APO75052 506 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-206ENST00000595974 ISG15P05161 165 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 PGA5P0DJD9 388 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms