RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NLKQ9UBE8 527 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4Q9UBX2 424 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.63□□□□□ -0.39
TRIM28-203ENST00000593582 V9GYS6 101 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 TENM1Q9UKZ4 2725 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 A0A1B0GTI1 187 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 OR2AT4A6NND4 320 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 CLDN34H7C241 214 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 DLGAP1O14490 977 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 SULT1C4O75897 302 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 TGM4P49221 684 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 IL13RA1P78552 427 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 CDONQ4KMG0 1287 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 HAGHLQ6PII5 290 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-203ENST00000593582 ZNF573Q86YE8 665 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 FGFRL1Q8N441 504 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 CBR4Q8N4T8 237 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 C3orf56Q8N813 242 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 OR14K1Q8NGZ2 314 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 ANGPTL6Q8NI99 470 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 GATAD2BQ8WXI9 593 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 AQP3Q92482 292 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 ZDHHC16Q969W1 377 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 TMIGD2Q96BF3 282 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 HRASLS5Q96KN8 279 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 C1orf147Q96MC9 270 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-203ENST00000593582 ONECUT1Q9UBC0 465 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 SLC22A13Q9Y226 551 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 SOX21Q9Y651 276 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-203ENST00000593582 KPTNQ9Y664 436 aa12.62□□□□□ -0.39
TRIM28-203ENST00000593582 CENPVL3A0A0U1RRI6 287 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 A0A1B0GVI7 797 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 RNASE1P07998 156 aaKnown RBP12.61□□□□□ -0.39
TRIM28-203ENST00000593582 AMY2BP19961 511 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 CFPP27918 469 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 SLC9A3R2Q15599 337 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 ODF4Q2M2E3 257 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 ZIK1Q3SY52 487 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-203ENST00000593582 SLC25A30Q5SVS4 291 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 MEDAGQ5VYS4 303 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 TMEM42Q69YG0 159 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 ZNF788Q6ZQV5 615 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 FAM220AQ7Z4H9 259 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 CATSPERDQ86XM0 798 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 CMTM4Q8IZR5 234 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 LY6G5BQ8NDX9 201 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 H1FXQ92522 213 aaKnown RBP12.61□□□□□ -0.39
TRIM28-203ENST00000593582 RORBQ92753 470 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 UBE2FQ969M7 185 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 DMRTB1Q96MA1 342 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 ADI1Q9BV57 179 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 SIRPDQ9H106 197 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 PLEKHA1Q9HB21 404 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 GPR173Q9NS66 373 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 RASL12Q9NYN1 266 aa12.61□□□□□ -0.39
TRIM28-203ENST00000593582 SLC25A10Q9UBX3 287 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-203ENST00000593582 MDFIC2A0A1B0GVS7 189 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 A6NIN4 97 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 SNTNA6NMZ2 147 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 SIGLEC5O15389 551 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 SYT7O43581 403 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 ENTPD6O75354 484 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 ACAA1P09110 424 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-203ENST00000593582 HKR1P10072 659 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 SELLP14151 372 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 CCL1P22362 96 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 HAAOP46952 286 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 GABRA2P47869 451 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 SNRPGP62308 76 aaKnown RBP12.6□□□□□ -0.39
TRIM28-203ENST00000593582 ACTC1P68032 377 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 ACTA1P68133 377 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 DEFB112Q30KQ8 113 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 SMIM21Q3B7S5 101 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 RUSC1-AS1Q66K80 236 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 Q6ZSR3 168 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 LHX4Q969G2 390 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 GAFA1Q96PS6 74 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 DCTN5Q9BTE1 182 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 C9orf16Q9BUW7 83 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 NOX4Q9NPH5 578 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 ACOXLQ9NUZ1 547 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 GNG8Q9UK08 70 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 POLDIP2Q9Y2S7 368 aa12.6□□□□□ -0.39
TRIM28-203ENST00000593582 IGKV1D-17A0A075B6S4 117 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 IGHV1-69DA0A0B4J2H0 117 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 PQLC2LA1A4F0 135 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 ANKRD61A6NGH8 418 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 J3QT63 122 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 HOXA3O43365 443 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-203ENST00000593582 IGHV1-69P01742 117 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 TFF1P04155 84 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 PSG2P11465 335 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 NDUFB7P17568 137 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 CAV3P56539 151 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 FOXL1Q12952 345 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 OCLNQ16625 522 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 DGUOKQ16854 277 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 AWAT1Q58HT5 328 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 VMO1Q7Z5L0 202 aa12.59□□□□□ -0.39
TRIM28-203ENST00000593582 KIR3DL3Q8N743 410 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms