RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZNF573Q86YE8 665 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 FBXL14Q8N1E6 418 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 ZNF611Q8N823 705 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 PNLDC1Q8NA58 520 aaKnown RBP13.71□□□□□ -0.21
SS18-211ENST00000578954 ZSCAN4Q8NAM6 433 aaPredicted RBP13.71□□□□□ -0.21
SS18-211ENST00000578954 PXT1Q8NFP0 134 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 OR10AD1Q8NGE0 317 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 PKIBQ9C010 78 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 LIN7BQ9HAP6 207 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 C14orf119Q9NWQ9 140 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 GHRLQ9UBU3 117 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 FBLN5Q9UBX5 448 aa13.71□□□□□ -0.21
SS18-211ENST00000578954 FBXO9Q9UK97 447 aaPredicted RBP13.71□□□□□ -0.21
SS18-211ENST00000578954 USP9YO00507 2555 aaPredicted RBP13.71□□□□□ -0.22
SS18-211ENST00000578954 ARFGEF3Q5TH69 2177 aa13.71□□□□□ -0.22
SS18-211ENST00000578954 LOC100289279A0A1B0GTE1 492 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 C17orf100A8MU93 164 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 F5H5P2 479 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 LDLRAD4O15165 306 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 CLPXO76031 633 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 IGHV1-46P01743 117 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 DANCRP0C864 163 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 UBBP0CG47 229 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 COX6B1P14854 86 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 PTGFRP43088 359 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 ZNF154Q13106 437 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 PDZK1IP1Q13113 114 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 C11orf71Q6IPW1 123 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 LINC00299Q6ZSB3 139 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 CALHM1Q8IU99 346 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 SAXO1Q8IYX7 474 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 MCFD2Q8NI22 146 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 TBC1D15Q8TC07 691 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 FAM3DQ96BQ1 224 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 ELMOD3Q96FG2 381 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 GPER1Q99527 375 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 NKX3-1Q99801 234 aaPredicted RBP13.7□□□□□ -0.22
SS18-211ENST00000578954 SMURF1Q9HCE7 757 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 CBLN4Q9NTU7 201 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 FAIMQ9NVQ4 179 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 NKIRAS2Q9NYR9 191 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 SPATA2Q9UM82 520 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 MRPS28Q9Y2Q9 187 aaKnown RBP13.7□□□□□ -0.22
SS18-211ENST00000578954 ETV7Q9Y603 341 aa13.7□□□□□ -0.22
SS18-211ENST00000578954 J3QT63 122 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 BPNT1O95861 308 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 GATA4P43694 442 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 HAAOP46952 286 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 PPOXP50336 477 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 CLDN12P56749 244 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 QRFPP83859 136 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 IL24Q13007 206 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 FAM209AQ5JX71 171 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 AGAP6Q5VW22 663 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 TMEM200AQ86VY9 491 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 ANGPTL5Q86XS5 388 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 OR2Z1Q8NG97 314 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 TNFAIP8L1Q8WVP5 186 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 RFT1Q96AA3 541 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 MEGF10Q96KG7 1140 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 CMTM3Q96MX0 182 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 PSMG3-AS1Q96PY0 264 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 MS4A5Q9H3V2 200 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 IL36GQ9NZH8 169 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 OR5V1Q9UGF6 321 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 IL19Q9UHD0 177 aa13.69□□□□□ -0.22
SS18-211ENST00000578954 A0A0B4J203 849 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 SPRY3O43610 288 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 PAHP00439 452 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 CD8AP01732 235 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 ACAA1P09110 424 aaPredicted RBP13.68□□□□□ -0.22
SS18-211ENST00000578954 SNRPBP14678 240 aaKnown RBP13.68□□□□□ -0.22
SS18-211ENST00000578954 TNFSF4P23510 183 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 POU3F4P49335 361 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 SRP9P49458 86 aaKnown RBP13.68□□□□□ -0.22
SS18-211ENST00000578954 SNRPD2P62316 118 aaKnown RBP13.68□□□□□ -0.22
SS18-211ENST00000578954 P2RY14Q15391 338 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 AWAT2Q6E213 333 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 MZT2AQ6P582 158 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 GLIPR1L1Q6UWM5 242 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 OR2W3Q7Z3T1 314 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 C1QL2Q7Z5L3 287 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 C11orf53Q8IXP5 236 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 Q8NFD4 153 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 OR51D1Q8NGF3 324 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 OR5D18Q8NGL1 313 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 OR5H6Q8NGV6 325 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 ZNF671Q8TAW3 534 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 LGALS14Q8TCE9 139 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 AQP3Q92482 292 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 PTX4Q96A99 478 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 C14orf79Q96F83 325 aa13.68□□□□□ -0.22
SS18-211ENST00000578954 TRAF4Q9BUZ4 470 aaPredicted RBP13.68□□□□□ -0.22
SS18-211ENST00000578954 IGKV1-12A0A0C4DH73 117 aa13.67□□□□□ -0.22
SS18-211ENST00000578954 TMEM14DPA8MWL7 114 aa13.67□□□□□ -0.22
SS18-211ENST00000578954 IGKV1D-12P01611 117 aa13.67□□□□□ -0.22
SS18-211ENST00000578954 SOD3P08294 240 aa13.67□□□□□ -0.22
SS18-211ENST00000578954 ARSBP15848 533 aa13.67□□□□□ -0.22
SS18-211ENST00000578954 CFHR2P36980 270 aa13.67□□□□□ -0.22
SS18-211ENST00000578954 BMXP51813 675 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms