RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 BCL2L1Q07817 233 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 DGCR6Q14129 220 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 TAL2Q16559 108 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ZNF718Q3SXZ3 478 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 KLF17Q5JT82 389 aaPredicted RBP4.48□□□□□ -1.69
VPS53-219ENST00000576019 C9orf66Q5T8R8 295 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 DUPD1Q68J44 220 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 AWAT2Q6E213 333 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ADAM5Q6NVV9 412 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 FAHD1Q6P587 224 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 CNIH2Q6PI25 160 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ABHD13Q7L211 337 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 GDPD3Q7L5L3 318 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 SKA3Q8IX90 412 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ZADH2Q8N4Q0 377 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 WDR31Q8NA23 367 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 AGAP11Q8TF27 550 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 CHCHD10Q8WYQ3 142 aaPredicted RBP4.48□□□□□ -1.69
VPS53-219ENST00000576019 ESR2Q92731 530 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 POTEKPQ9BYX7 375 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 PLEKHF2Q9H8W4 249 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 UCK1Q9HA47 277 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 MRM3Q9HC36 420 aaKnown RBP4.48□□□□□ -1.69
VPS53-219ENST00000576019 KCNJ16Q9NPI9 418 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 IMPAD1Q9NX62 359 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ZNF282Q9UDV7 671 aaPredicted RBP4.48□□□□□ -1.69
VPS53-219ENST00000576019 HYOU1Q9Y4L1 999 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 CSAG2Q9Y5P2 127 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 DHRS7CA6NNS2 312 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 FAM166BA8MTA8 275 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 HACD1B0YJ81 288 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 C21orf140B9A014 251 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 F8VP50 259 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 SMKR1H3BMG3 65 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 RAD51BO15315 384 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 PIN1P1O15428 100 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 RCBTB2O95199 551 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 TNFAIP8O95379 198 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 OR8U8P0C7N1 319 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 OCMP0CE72 109 aaPredicted RBP4.47□□□□□ -1.69
VPS53-219ENST00000576019 DRD3P35462 400 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 PCK1P35558 622 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ARR3P36575 388 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 CEACAM3P40198 252 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 KIR2DS2P43631 304 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 NANOS2P60321 138 aaKnown RBP4.47□□□□□ -1.69
VPS53-219ENST00000576019 VSNL1P62760 191 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ZNF92Q03936 586 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ZNF726P1Q15940 193 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ZNF876PQ49A33 203 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ZBED5Q49AG3 693 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ZNF585BQ52M93 769 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 OLFML2AQ68BL7 652 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 OR5M10Q6IEU7 315 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 PLEKHG7Q6ZR37 379 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 Q6ZSR6 202 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ARRDC1Q8N5I2 433 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ZNF740Q8NDX6 193 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 PHF10Q8WUB8 498 aaKnown RBP4.47□□□□□ -1.69
VPS53-219ENST00000576019 TFB1MQ8WVM0 346 aaKnown RBP4.47□□□□□ -1.69
VPS53-219ENST00000576019 ANKRD7Q92527 254 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 TMEM54Q969K7 222 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 CEP170P1Q96L14 293 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 ZFP3Q96NJ6 502 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 SCGB3A2Q96PL1 93 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 SLC38A1Q9H2H9 487 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 OR51J1Q9H342 316 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 TCEAL2Q9H3H9 227 aaPredicted RBP4.47□□□□□ -1.69
VPS53-219ENST00000576019 TMPRSS5Q9H3S3 457 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 SAV1Q9H4B6 383 aaPredicted RBP4.47□□□□□ -1.69
VPS53-219ENST00000576019 PLEKHA1Q9HB21 404 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 XPNPEP1Q9NQW7 623 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 FBXO8Q9NRD0 319 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 TREM2Q9NZC2 230 aa4.47□□□□□ -1.69
VPS53-219ENST00000576019 APOBEC3BQ9UH17 382 aaKnown RBP4.47□□□□□ -1.69
VPS53-219ENST00000576019 NYNRINQ9P2P1 1898 aaKnown RBP4.46□□□□□ -1.7
VPS53-219ENST00000576019 TRAV8-7A0A075B6U6 113 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 A0A087X002 238 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 FAM220BPB1ANY3 271 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 F8VZ95 297 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 KLRC4-KLRK1H3BQV0 150 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 hCG_2039718K7EN88 272 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 GABRPO00591 440 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 SLC31A1O15431 190 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 ZW10O43264 779 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 EMC8O43402 210 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 PSIP1O75475 530 aaKnown RBP4.46□□□□□ -1.7
VPS53-219ENST00000576019 ACTL6AO96019 429 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 TACSTD2P09758 323 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CT45A6P0DMU7 189 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CT45A5P0DMU8 189 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CT45A7P0DMV0 189 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 T-ENOLP0DO92 83 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 RAB4AP20338 218 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CNR1P21554 472 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CCKARP32238 428 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 HCAR3P49019 387 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 PRLHRP49683 370 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 ERVK11-1P61568 191 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 MADCAM1Q13477 382 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms