RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SIGLEC9Q9Y336 463 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 H3BN98 237 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 CST1P01037 141 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 PSG2P11465 335 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 PAICSP22234 425 aaKnown RBP17.16■□□□□ 0.34
VPS53-216ENST00000574029 GABRA2P47869 451 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 GPM6AP51674 278 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 BEAN1Q3B7T3 259 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 CRIP3Q6Q6R5 217 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 ZNRF1Q8ND25 227 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 FEVQ99581 238 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 OR51I2Q9H344 312 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 NIPAL2Q9H841 368 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 KLHDC2Q9Y2U9 406 aa17.16■□□□□ 0.34
VPS53-216ENST00000574029 PRR23D1E9PI22 279 aaPredicted RBP17.15■□□□□ 0.34
VPS53-216ENST00000574029 H0YAE9 185 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 OPN1MWP04001 364 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 PRR23D2P0DMB1 279 aaPredicted RBP17.15■□□□□ 0.34
VPS53-216ENST00000574029 OPN1MW2P0DN77 364 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 OPN1MW3P0DN78 364 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 GNG3P63215 75 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 AANATQ16613 207 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 KPRPQ5T749 579 aaPredicted RBP17.15■□□□□ 0.34
VPS53-216ENST00000574029 PLBD1Q6P4A8 553 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 CCDC121Q6ZUS5 278 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 TMEM185AQ8NFB2 350 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 OR51G2Q8NGK0 314 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 GIPC3Q8TF64 312 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 CFHR4Q92496 578 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 RORBQ92753 470 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 SDSLQ96GA7 329 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 RANBP3Q9H6Z4 567 aaPredicted RBP17.15■□□□□ 0.34
VPS53-216ENST00000574029 YY1AP1Q9H869 796 aa17.15■□□□□ 0.34
VPS53-216ENST00000574029 ARRDC5A6NEK1 342 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 ZNF732B4DXR9 585 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 G3V4G9 280 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 EBAG9O00559 213 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 PRODHO43272 600 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 ANGPTL7O43827 346 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 MAP2K3P46734 347 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 LY6EQ16553 131 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 LRRC75BQ2VPJ9 315 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 CEACAM21Q3KPI0 293 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 FBLN7Q53RD9 439 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 FAM185AQ8N0U4 392 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 OR4C13Q8NGP0 309 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 ZNF671Q8TAW3 534 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 ITFG2Q969R8 447 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 FOXJ3Q9UPW0 622 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 LRP12Q9Y561 859 aa17.14■□□□□ 0.33
VPS53-216ENST00000574029 FKBP6O75344 327 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 ALOX5APP20292 161 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 CBX1P83916 185 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 GINS1Q14691 196 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 CEP78Q5JTW2 689 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 SAMD5Q5TGI4 173 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 MKXQ8IYA7 352 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 OR5K1Q8NHB7 308 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 FAM81AQ8TBF8 368 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 AQP3Q92482 292 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 RAB18Q9NP72 206 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 C19orf12Q9NSK7 152 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 RASL12Q9NYN1 266 aa17.13■□□□□ 0.33
VPS53-216ENST00000574029 A0A0U1RQV5 110 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 MEGF11A6BM72 1044 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 ACOD1A6NK06 481 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 OR5B21A6NL26 309 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 MTRF1O75570 445 aaKnown RBP17.12■□□□□ 0.33
VPS53-216ENST00000574029 SLC35D3Q5M8T2 416 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 HIST2H2BDQ6DRA6 164 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 KRT77Q7Z794 578 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 C11orf42Q8N5U0 333 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 OR5A2Q8NGI9 324 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 OR2T6Q8NHC8 308 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 FAM206AQ9NX38 181 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 DNAJB9Q9UBS3 223 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 PLXNB1O43157 2135 aa17.12■□□□□ 0.33
VPS53-216ENST00000574029 GNGT2O14610 69 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 C1orf146Q5VVC0 180 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 LIAT1Q6ZQX7 453 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 THAP5Q7Z6K1 395 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 CPOQ8IVL8 374 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 CD177Q8N6Q3 437 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 KLHDC1Q8N7A1 406 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 C11orf44Q8N8P7 122 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 PIFOQ8TCI5 191 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 UTP4Q969X6 686 aaKnown RBP17.11■□□□□ 0.33
VPS53-216ENST00000574029 LAMP5Q9UJQ1 280 aa17.11■□□□□ 0.33
VPS53-216ENST00000574029 CHST1O43916 411 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 IGLV3-1P01715 115 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 HMGN1P05114 100 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 ATP6V1B1P15313 513 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 SLC2A5P22732 501 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 PAX6P26367 422 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 CDK5Q00535 292 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 DMRTC1Q5HYR2 192 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 TMEM200BQ69YZ2 307 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 HAGHLQ6PII5 290 aaPredicted RBP17.1■□□□□ 0.33
VPS53-216ENST00000574029 DEGS2Q6QHC5 323 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 ACP7Q6ZNF0 438 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms