RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GPR32P1Q8NGA4 272 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 HDAC8Q9BY41 377 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 PLA2G2EQ9NZK7 142 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 MTFP1Q9UDX5 166 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 ZNF107Q9UII5 783 aaPredicted RBP9.62□□□□□ -0.87
CLK3-226ENST00000569406 TRAV30A0A087WSZ9 112 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 RAB27BO00194 218 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 CORTO00230 105 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 RBMXL2O75526 392 aaKnown RBP9.62□□□□□ -0.87
CLK3-226ENST00000569406 GLB1P16278 677 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 SMIM11AP58511 58 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 RBPJQ06330 500 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 ABHD12BQ7Z5M8 362 aaPredicted RBP9.62□□□□□ -0.87
CLK3-226ENST00000569406 OR4D11Q8NGI4 311 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 C20orf144Q9BQM9 153 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 NIPSNAP3BQ9BS92 247 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 EFCAB11Q9BUY7 163 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 RNF126Q9BV68 326 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 MED20Q9H944 212 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 GPR35Q9HC97 309 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 OR5AC2Q9NZP5 309 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 ZNF319Q9P2F9 582 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 YBX2Q9Y2T7 364 aaKnown RBP9.62□□□□□ -0.87
CLK3-226ENST00000569406 RFNGQ9Y644 331 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 COL4A2P08572 1712 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 H0YIZ8 118 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 H7BY64 318 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 TMPRSS11DO60235 418 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 OR7C2O60412 319 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 EPPINO95925 133 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 UCP1P25874 307 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 LGALS7P47929 136 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 CDK3Q00526 305 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 SHHQ15465 462 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 NR0B2Q15466 257 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 TMEM241Q24JQ0 296 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 STPG1Q5TH74 334 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 ACOT4Q8N9L9 421 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 OR6T1Q8NGN1 323 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 OR51F2Q8NH61 342 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 VN1R17PQ8TDU5 208 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 PRAP1Q96NZ9 151 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 AIF1LQ9BQI0 150 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 RBKSQ9H477 322 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 CDV3Q9UKY7 258 aaKnown RBP9.61□□□□□ -0.87
CLK3-226ENST00000569406 MEMO1Q9Y316 297 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 TRAV18A0A075B6X5 111 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 IFITM5A6NNB3 132 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 PDGFBP01127 241 aaPredicted RBP9.61□□□□□ -0.87
CLK3-226ENST00000569406 LMO1P25800 156 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 PPP1R1AQ13522 171 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 MPV17LQ2QL34 196 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 LHFPL2Q6ZUX7 228 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 SLC25A26Q70HW3 274 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 SAXO1Q8IYX7 474 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 OR1N2Q8NGR9 330 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 MOB3AQ96BX8 217 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 THAP10Q9P2Z0 257 aaPredicted RBP9.61□□□□□ -0.87
CLK3-226ENST00000569406 OSGIN2Q9Y236 505 aa9.61□□□□□ -0.87
CLK3-226ENST00000569406 IGLON5A6NGN9 336 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 RNF212BA8MTL3 300 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ZNF749O43361 778 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 GALR2O43603 387 aaPredicted RBP9.6□□□□□ -0.87
CLK3-226ENST00000569406 SMAGPQ0VAQ4 97 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ATG4DQ86TL0 474 aaPredicted RBP9.6□□□□□ -0.87
CLK3-226ENST00000569406 LINC00471Q8N535 108 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 OR52L2PQ8NGH6 319 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ZNF563Q8TA94 476 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 KLK6Q92876 244 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 TVP23CQ96ET8 276 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 SLC35G5Q96KT7 338 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 MS4A8Q9BY19 250 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 TNRC18O15417 2968 aaPredicted RBP9.6□□□□□ -0.87
CLK3-226ENST00000569406 CEP290O15078 2479 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 FTCDNL1E5RQL4 147 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ITGB2P05107 769 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 LSSP48449 732 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 NCBP2P52298 156 aaKnown RBP eCLIP9.6□□□□□ -0.87
CLK3-226ENST00000569406 WDR25Q64LD2 544 aaPredicted RBP9.6□□□□□ -0.87
CLK3-226ENST00000569406 PWWP2BQ6NUJ5 590 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 DPPA3Q6W0C5 159 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 TMEM182Q6ZP80 229 aaPredicted RBP9.6□□□□□ -0.87
CLK3-226ENST00000569406 SLC38A5Q8WUX1 472 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 FAM131CQ96AQ9 280 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 HAVCR1Q96D42 359 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 SLC35D1Q9NTN3 355 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 OR5V1Q9UGF6 321 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ADAM29Q9UKF5 820 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 VPS13AQ96RL7 3174 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 TICRRQ7Z2Z1 1910 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 EPOPA6NHQ4 379 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 G3V3Y1 287 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 MMP23AO75900 390 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 MT-CO2P00403 227 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ARAFP10398 606 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 MMP9P14780 707 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 BMP5P22003 454 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 AGERQ15109 404 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ZNF793Q6ZN11 406 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 NIT1Q86X76 327 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms